Cluster: ShaoY_2019_ERR3405254_bin.1_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405254_bin.1
- CGC Family ID: CGCFAM_03353
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405254_bin.1_k141_920 | ShaoY_2019_ERR3405254_bin.1_k141_920_9 | 6665 | 8581 | - | 1.C.39.4.5 |
| STP | ShaoY_2019_ERR3405254_bin.1_k141_920 | ShaoY_2019_ERR3405254_bin.1_k141_920_10 | 8571 | 9002 | - | NUDIX |
| STP | ShaoY_2019_ERR3405254_bin.1_k141_920 | ShaoY_2019_ERR3405254_bin.1_k141_920_11 | 9011 | 9466 | - | NUDIX |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_920 | ShaoY_2019_ERR3405254_bin.1_k141_920_12 | 9614 | 10225 | - | 2.A.95.1.3 |
| pfam | ShaoY_2019_ERR3405254_bin.1_k141_920 | ShaoY_2019_ERR3405254_bin.1_k141_920_13 | 10245 | 11366 | - | NAD_synthase | tRNA_Me_trans | tRNA_Me_trans_C | tRNA_Me_trans_M |
| TF | ShaoY_2019_ERR3405254_bin.1_k141_920 | ShaoY_2019_ERR3405254_bin.1_k141_920_14 | 12324 | 13187 | + | HTH_3 |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_920 | ShaoY_2019_ERR3405254_bin.1_k141_920_15 | 13239 | 13865 | - | CBM50 |
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_920_9
Type: TC
Location: 6665 - 8581 (-)
Type: TC
Location: 6665 - 8581 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_920_10
Type: STP
Location: 8571 - 9002 (-)
Type: STP
Location: 8571 - 9002 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_920_11
Type: STP
Location: 9011 - 9466 (-)
Type: STP
Location: 9011 - 9466 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_920_12
Type: TC
Location: 9614 - 10225 (-)
Type: TC
Location: 9614 - 10225 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_920_13
Type: pfam
Location: 10245 - 11366 (-)
Type: pfam
Location: 10245 - 11366 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_920_14
Type: TF
Location: 12324 - 13187 (+)
Type: TF
Location: 12324 - 13187 (+)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_920_15
Type: CAZyme
Location: 13239 - 13865 (-)
Type: CAZyme
Location: 13239 - 13865 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.