Cluster: ShaoY_2019_ERR3405254_bin.1_CGC22
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405254_bin.1
- CGC Family ID: CGCFAM_02806
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2482 | ShaoY_2019_ERR3405254_bin.1_k141_2482_53 | 68058 | 70742 | - | 3.A.3.2.28 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2482 | ShaoY_2019_ERR3405254_bin.1_k141_2482_54 | 71011 | 72201 | + | 2.A.4.7.6 |
| pfam | ShaoY_2019_ERR3405254_bin.1_k141_2482 | ShaoY_2019_ERR3405254_bin.1_k141_2482_55 | 72242 | 73129 | - | ROK |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2482 | ShaoY_2019_ERR3405254_bin.1_k141_2482_56 | 73438 | 75321 | - | 4.A.1.2.12 |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_2482 | ShaoY_2019_ERR3405254_bin.1_k141_2482_57 | 75683 | 77137 | + | GH32 |
| TF | ShaoY_2019_ERR3405254_bin.1_k141_2482 | ShaoY_2019_ERR3405254_bin.1_k141_2482_58 | 77118 | 78083 | + | LacI |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2482 | ShaoY_2019_ERR3405254_bin.1_k141_2482_59 | 78120 | 79394 | - | 2.A.6.6.11 |
| pfam | ShaoY_2019_ERR3405254_bin.1_k141_2482 | ShaoY_2019_ERR3405254_bin.1_k141_2482_60 | 79394 | 80566 | - | Chal_sti_synt_N | HMG_CoA_synt_N | HMG_CoA_synt_C | HMG_CoA_synt_C |
| pfam | ShaoY_2019_ERR3405254_bin.1_k141_2482 | ShaoY_2019_ERR3405254_bin.1_k141_2482_61 | 80743 | 81192 | - | ThrE_2 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2482 | ShaoY_2019_ERR3405254_bin.1_k141_2482_62 | 81194 | 81952 | - | 2.A.79.1.5 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2482 | ShaoY_2019_ERR3405254_bin.1_k141_2482_63 | 82057 | 83943 | - | 9.B.106.2.2 |
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2482_53
Type: TC
Location: 68058 - 70742 (-)
Type: TC
Location: 68058 - 70742 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2482_54
Type: TC
Location: 71011 - 72201 (+)
Type: TC
Location: 71011 - 72201 (+)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2482_55
Type: pfam
Location: 72242 - 73129 (-)
Type: pfam
Location: 72242 - 73129 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2482_56
Type: TC
Location: 73438 - 75321 (-)
Type: TC
Location: 73438 - 75321 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2482_57
Type: CAZyme
Location: 75683 - 77137 (+)
Type: CAZyme
Location: 75683 - 77137 (+)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2482_58
Type: TF
Location: 77118 - 78083 (+)
Type: TF
Location: 77118 - 78083 (+)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2482_59
Type: TC
Location: 78120 - 79394 (-)
Type: TC
Location: 78120 - 79394 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2482_60
Type: pfam
Location: 79394 - 80566 (-)
Type: pfam
Location: 79394 - 80566 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2482_61
Type: pfam
Location: 80743 - 81192 (-)
Type: pfam
Location: 80743 - 81192 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2482_62
Type: TC
Location: 81194 - 81952 (-)
Type: TC
Location: 81194 - 81952 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2482_63
Type: TC
Location: 82057 - 83943 (-)
Type: TC
Location: 82057 - 83943 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.