Cluster: ShaoY_2019_ERR3405254_bin.1_CGC19
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405254_bin.1
- CGC Family ID: CGCFAM_00401
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_2 | 3294 | 9551 | - | GH29 |
| pfam | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_3 | 9874 | 10758 | - | ROK |
| pfam | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_4 | 10774 | 11691 | - | DHDPS |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_5 | 11856 | 12506 | - | 9.B.28.1.4 |
| pfam | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_6 | 12527 | 12979 | - | DUF386 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_7 | 13175 | 14017 | - | 3.A.1.1.34 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_8 | 14033 | 14920 | - | 3.A.1.1.20 |
| STP | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_9 | 15133 | 16458 | - | SBP_bac_1 |
| pfam | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_10 | 16576 | 17274 | - | NanE |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_11 | 17568 | 20780 | - | CBM40 | GH33 |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_12 | 21365 | 25411 | - | CBM40 | GH33 |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_13 | 25780 | 26763 | - | CE7 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_14 | 27198 | 28124 | - | 3.A.1.5.25 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_15 | 28135 | 29202 | - | 3.A.1.5.25 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_16 | 29211 | 30137 | - | 3.A.1.5.10 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_17 | 30137 | 31633 | - | 3.A.1.5.32 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_18 | 31699 | 33678 | - | 3.A.1.5.19 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2251 | ShaoY_2019_ERR3405254_bin.1_k141_2251_19 | 34149 | 35480 | - | 9.A.40.2.1 |
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_2
Type: CAZyme
Location: 3294 - 9551 (-)
Type: CAZyme
Location: 3294 - 9551 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_3
Type: pfam
Location: 9874 - 10758 (-)
Type: pfam
Location: 9874 - 10758 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_4
Type: pfam
Location: 10774 - 11691 (-)
Type: pfam
Location: 10774 - 11691 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_5
Type: TC
Location: 11856 - 12506 (-)
Type: TC
Location: 11856 - 12506 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_6
Type: pfam
Location: 12527 - 12979 (-)
Type: pfam
Location: 12527 - 12979 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_7
Type: TC
Location: 13175 - 14017 (-)
Type: TC
Location: 13175 - 14017 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_8
Type: TC
Location: 14033 - 14920 (-)
Type: TC
Location: 14033 - 14920 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_9
Type: STP
Location: 15133 - 16458 (-)
Type: STP
Location: 15133 - 16458 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_10
Type: pfam
Location: 16576 - 17274 (-)
Type: pfam
Location: 16576 - 17274 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_11
Type: CAZyme
Location: 17568 - 20780 (-)
Type: CAZyme
Location: 17568 - 20780 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_12
Type: CAZyme
Location: 21365 - 25411 (-)
Type: CAZyme
Location: 21365 - 25411 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_13
Type: CAZyme
Location: 25780 - 26763 (-)
Type: CAZyme
Location: 25780 - 26763 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_14
Type: TC
Location: 27198 - 28124 (-)
Type: TC
Location: 27198 - 28124 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_15
Type: TC
Location: 28135 - 29202 (-)
Type: TC
Location: 28135 - 29202 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_16
Type: TC
Location: 29211 - 30137 (-)
Type: TC
Location: 29211 - 30137 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_17
Type: TC
Location: 30137 - 31633 (-)
Type: TC
Location: 30137 - 31633 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_18
Type: TC
Location: 31699 - 33678 (-)
Type: TC
Location: 31699 - 33678 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2251_19
Type: TC
Location: 34149 - 35480 (-)
Type: TC
Location: 34149 - 35480 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.