Cluster: ShaoY_2019_ERR3405254_bin.1_CGC17
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405254_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2025 | ShaoY_2019_ERR3405254_bin.1_k141_2025_16 | 15673 | 16593 | - | 3.A.1.1.29 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2025 | ShaoY_2019_ERR3405254_bin.1_k141_2025_17 | 16607 | 17536 | - | 3.A.1.1.10 |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_2025 | ShaoY_2019_ERR3405254_bin.1_k141_2025_18 | 17743 | 19623 | - | GH20 |
| pfam | ShaoY_2019_ERR3405254_bin.1_k141_2025 | ShaoY_2019_ERR3405254_bin.1_k141_2025_19 | 19617 | 20486 | - | ROK |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_2025 | ShaoY_2019_ERR3405254_bin.1_k141_2025_20 | 20571 | 23216 | - | GH38 |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_2025 | ShaoY_2019_ERR3405254_bin.1_k141_2025_21 | 23403 | 24683 | - | GH125 |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_2025 | ShaoY_2019_ERR3405254_bin.1_k141_2025_22 | 24856 | 26940 | + | GH92 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_2025 | ShaoY_2019_ERR3405254_bin.1_k141_2025_23 | 27366 | 28814 | + | 2.A.3.7.6 |
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2025_16
Type: TC
Location: 15673 - 16593 (-)
Type: TC
Location: 15673 - 16593 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2025_17
Type: TC
Location: 16607 - 17536 (-)
Type: TC
Location: 16607 - 17536 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2025_18
Type: CAZyme
Location: 17743 - 19623 (-)
Type: CAZyme
Location: 17743 - 19623 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2025_19
Type: pfam
Location: 19617 - 20486 (-)
Type: pfam
Location: 19617 - 20486 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2025_20
Type: CAZyme
Location: 20571 - 23216 (-)
Type: CAZyme
Location: 20571 - 23216 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2025_21
Type: CAZyme
Location: 23403 - 24683 (-)
Type: CAZyme
Location: 23403 - 24683 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2025_22
Type: CAZyme
Location: 24856 - 26940 (+)
Type: CAZyme
Location: 24856 - 26940 (+)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_2025_23
Type: TC
Location: 27366 - 28814 (+)
Type: TC
Location: 27366 - 28814 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.