Cluster: ShaoY_2019_ERR3405254_bin.1_CGC11
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405254_bin.1
- CGC Family ID: CGCFAM_05796
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405254_bin.1_k141_1301 | ShaoY_2019_ERR3405254_bin.1_k141_1301_58 | 46862 | 47563 | - | 9.B.2.1.16 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405254_bin.1_k141_1301 | ShaoY_2019_ERR3405254_bin.1_k141_1301_59 | 47615 | 47779 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_1301 | ShaoY_2019_ERR3405254_bin.1_k141_1301_60 | 48419 | 56755 | - | CBM32 | GH20 | GH84 |
| CAZyme | ShaoY_2019_ERR3405254_bin.1_k141_1301 | ShaoY_2019_ERR3405254_bin.1_k141_1301_61 | 56912 | 63856 | - | GH101 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_1301 | ShaoY_2019_ERR3405254_bin.1_k141_1301_62 | 64187 | 66517 | - | 3.A.12.1.1 |
| pfam | ShaoY_2019_ERR3405254_bin.1_k141_1301 | ShaoY_2019_ERR3405254_bin.1_k141_1301_63 | 66649 | 67437 | - | HEAT_2 |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_1301 | ShaoY_2019_ERR3405254_bin.1_k141_1301_64 | 67706 | 69661 | - | 4.A.2.1.20 |
| STP | ShaoY_2019_ERR3405254_bin.1_k141_1301 | ShaoY_2019_ERR3405254_bin.1_k141_1301_65 | 69658 | 70569 | - | PfkB |
| TF | ShaoY_2019_ERR3405254_bin.1_k141_1301 | ShaoY_2019_ERR3405254_bin.1_k141_1301_66 | 70566 | 71306 | - | HTH_DeoR |
| TC | ShaoY_2019_ERR3405254_bin.1_k141_1301 | ShaoY_2019_ERR3405254_bin.1_k141_1301_67 | 71686 | 73020 | - | 2.A.55.2.6 |
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1301_58
Type: TC
Location: 46862 - 47563 (-)
Type: TC
Location: 46862 - 47563 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1301_59
Type:
Location: 47615 - 47779 (-)
Type:
Location: 47615 - 47779 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1301_60
Type: CAZyme
Location: 48419 - 56755 (-)
Type: CAZyme
Location: 48419 - 56755 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1301_61
Type: CAZyme
Location: 56912 - 63856 (-)
Type: CAZyme
Location: 56912 - 63856 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1301_62
Type: TC
Location: 64187 - 66517 (-)
Type: TC
Location: 64187 - 66517 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1301_63
Type: pfam
Location: 66649 - 67437 (-)
Type: pfam
Location: 66649 - 67437 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1301_64
Type: TC
Location: 67706 - 69661 (-)
Type: TC
Location: 67706 - 69661 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1301_65
Type: STP
Location: 69658 - 70569 (-)
Type: STP
Location: 69658 - 70569 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1301_66
Type: TF
Location: 70566 - 71306 (-)
Type: TF
Location: 70566 - 71306 (-)
Gene ID: ShaoY_2019_ERR3405254_bin.1_k141_1301_67
Type: TC
Location: 71686 - 73020 (-)
Type: TC
Location: 71686 - 73020 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.