Cluster: ShaoY_2019_ERR3405110_bin.4_CGC8
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405110_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405110_bin.4_k141_5118 | ShaoY_2019_ERR3405110_bin.4_k141_5118_101 | 103572 | 104948 | - | GH13_20 |
| TC | ShaoY_2019_ERR3405110_bin.4_k141_5118 | ShaoY_2019_ERR3405110_bin.4_k141_5118_102 | 105102 | 106298 | - | 2.A.1.2.18 |
| TC | ShaoY_2019_ERR3405110_bin.4_k141_5118 | ShaoY_2019_ERR3405110_bin.4_k141_5118_103 | 106420 | 108780 | - | 9.A.8.1.6 |
| peptidase | ShaoY_2019_ERR3405110_bin.4_k141_5118 | ShaoY_2019_ERR3405110_bin.4_k141_5118_104 | 108965 | 109867 | - | S09.UPW |
| TC | ShaoY_2019_ERR3405110_bin.4_k141_5118 | ShaoY_2019_ERR3405110_bin.4_k141_5118_105 | 110111 | 110674 | + | 4.A.1.2.6 |
| pfam | ShaoY_2019_ERR3405110_bin.4_k141_5118 | ShaoY_2019_ERR3405110_bin.4_k141_5118_106 | 110856 | 112259 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405110_bin.4_k141_5118 | ShaoY_2019_ERR3405110_bin.4_k141_5118_107 | 112519 | 113304 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405110_bin.4_k141_5118 | ShaoY_2019_ERR3405110_bin.4_k141_5118_108 | 113465 | 114445 | + | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3405110_bin.4_k141_5118 | ShaoY_2019_ERR3405110_bin.4_k141_5118_109 | 114650 | 115573 | + | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3405110_bin.4_k141_5118 | ShaoY_2019_ERR3405110_bin.4_k141_5118_110 | 115566 | 116360 | + | 3.A.1.34.1 |
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5118_101
Type: CAZyme
Location: 103572 - 104948 (-)
Type: CAZyme
Location: 103572 - 104948 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5118_102
Type: TC
Location: 105102 - 106298 (-)
Type: TC
Location: 105102 - 106298 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5118_103
Type: TC
Location: 106420 - 108780 (-)
Type: TC
Location: 106420 - 108780 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5118_104
Type: peptidase
Location: 108965 - 109867 (-)
Type: peptidase
Location: 108965 - 109867 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5118_105
Type: TC
Location: 110111 - 110674 (+)
Type: TC
Location: 110111 - 110674 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5118_106
Type: pfam
Location: 110856 - 112259 (+)
Type: pfam
Location: 110856 - 112259 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5118_107
Type:
Location: 112519 - 113304 (+)
Type:
Location: 112519 - 113304 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5118_108
Type: TC
Location: 113465 - 114445 (+)
Type: TC
Location: 113465 - 114445 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5118_109
Type: TC
Location: 114650 - 115573 (+)
Type: TC
Location: 114650 - 115573 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5118_110
Type: TC
Location: 115566 - 116360 (+)
Type: TC
Location: 115566 - 116360 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905204415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.