Cluster: ShaoY_2019_ERR3405110_bin.4_CGC2
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405110_bin.4
- CGC Family ID: CGCFAM_00008
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405110_bin.4_k141_2897 | ShaoY_2019_ERR3405110_bin.4_k141_2897_14 | 13621 | 14313 | + | GT2 |
| pfam | ShaoY_2019_ERR3405110_bin.4_k141_2897 | ShaoY_2019_ERR3405110_bin.4_k141_2897_15 | 14319 | 14642 | + | DUF2304 |
| pfam | ShaoY_2019_ERR3405110_bin.4_k141_2897 | ShaoY_2019_ERR3405110_bin.4_k141_2897_16 | 14671 | 16719 | + | DUF6541 |
| CAZyme | ShaoY_2019_ERR3405110_bin.4_k141_2897 | ShaoY_2019_ERR3405110_bin.4_k141_2897_17 | 16754 | 18631 | + | GT2 |
| pfam | ShaoY_2019_ERR3405110_bin.4_k141_2897 | ShaoY_2019_ERR3405110_bin.4_k141_2897_18 | 18731 | 19918 | + | LicD |
| CAZyme | ShaoY_2019_ERR3405110_bin.4_k141_2897 | ShaoY_2019_ERR3405110_bin.4_k141_2897_19 | 19951 | 21792 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3405110_bin.4_k141_2897 | ShaoY_2019_ERR3405110_bin.4_k141_2897_20 | 21824 | 22753 | - | GT2 |
| TC | ShaoY_2019_ERR3405110_bin.4_k141_2897 | ShaoY_2019_ERR3405110_bin.4_k141_2897_21 | 22915 | 23760 | + | 3.A.1.103.6 |
| TC | ShaoY_2019_ERR3405110_bin.4_k141_2897 | ShaoY_2019_ERR3405110_bin.4_k141_2897_22 | 23773 | 24540 | + | 3.A.1.103.1 |
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_2897_14
Type: CAZyme
Location: 13621 - 14313 (+)
Type: CAZyme
Location: 13621 - 14313 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_2897_15
Type: pfam
Location: 14319 - 14642 (+)
Type: pfam
Location: 14319 - 14642 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_2897_16
Type: pfam
Location: 14671 - 16719 (+)
Type: pfam
Location: 14671 - 16719 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_2897_17
Type: CAZyme
Location: 16754 - 18631 (+)
Type: CAZyme
Location: 16754 - 18631 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_2897_18
Type: pfam
Location: 18731 - 19918 (+)
Type: pfam
Location: 18731 - 19918 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_2897_19
Type: CAZyme
Location: 19951 - 21792 (+)
Type: CAZyme
Location: 19951 - 21792 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_2897_20
Type: CAZyme
Location: 21824 - 22753 (-)
Type: CAZyme
Location: 21824 - 22753 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_2897_21
Type: TC
Location: 22915 - 23760 (+)
Type: TC
Location: 22915 - 23760 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_2897_22
Type: TC
Location: 23773 - 24540 (+)
Type: TC
Location: 23773 - 24540 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905204415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405110_bin.4_k141_2897_17 | vegan > omnivore | 9.87977 | 0.00364 |
| ShaoY_2019_ERR3405110_bin.4_k141_2897_18 | vegan > omnivore | 17.71002 | 0.00364 |
| ShaoY_2019_ERR3405110_bin.4_k141_2897_19 | vegan > omnivore | 17.52755 | 0.00364 |
| ShaoY_2019_ERR3405110_bin.4_k141_2897_19 | vegetarian > omnivore | 12.64708 | 0.00825 |
| ShaoY_2019_ERR3405110_bin.4_k141_2897_20 | vegan > omnivore | 1.50904 | 0.00364 |
| ShaoY_2019_ERR3405110_bin.4_k141_2897_21 | vegan > omnivore | 2.08805 | 0.00364 |