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Cluster: ShaoY_2019_ERR3405110_bin.4_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405110_bin.4_k141_6391 ShaoY_2019_ERR3405110_bin.4_k141_6391_72 86661 89669 + GH2
NULL(UNKNOWN) ShaoY_2019_ERR3405110_bin.4_k141_6391 ShaoY_2019_ERR3405110_bin.4_k141_6391_73 89673 90128 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405110_bin.4_k141_6391 ShaoY_2019_ERR3405110_bin.4_k141_6391_74 90282 91745 + 2.A.3.7.4
STP ShaoY_2019_ERR3405110_bin.4_k141_6391 ShaoY_2019_ERR3405110_bin.4_k141_6391_75 92168 92416 + PTS-HPr
STP ShaoY_2019_ERR3405110_bin.4_k141_6391 ShaoY_2019_ERR3405110_bin.4_k141_6391_76 92654 92896 + FeoA
TC ShaoY_2019_ERR3405110_bin.4_k141_6391 ShaoY_2019_ERR3405110_bin.4_k141_6391_77 92936 93157 + 9.A.8.1.6
TC ShaoY_2019_ERR3405110_bin.4_k141_6391 ShaoY_2019_ERR3405110_bin.4_k141_6391_78 93281 95608 + 9.A.8.1.6
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_6391_72
Type: CAZyme
Location: 86661 - 89669 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_6391_73
Type:
Location: 89673 - 90128 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_6391_74
Type: TC
Location: 90282 - 91745 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_6391_75
Type: STP
Location: 92168 - 92416 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_6391_76
Type: STP
Location: 92654 - 92896 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_6391_77
Type: TC
Location: 92936 - 93157 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_6391_78
Type: TC
Location: 93281 - 95608 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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