dbCAN Logo

Cluster: ShaoY_2019_ERR3405110_bin.4_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405110_bin.4_k141_5842 ShaoY_2019_ERR3405110_bin.4_k141_5842_79 78803 80224 - GH1
TC ShaoY_2019_ERR3405110_bin.4_k141_5842 ShaoY_2019_ERR3405110_bin.4_k141_5842_80 80301 82064 - 4.A.3.1.1
TF ShaoY_2019_ERR3405110_bin.4_k141_5842 ShaoY_2019_ERR3405110_bin.4_k141_5842_81 82340 83350 + LacI
TC ShaoY_2019_ERR3405110_bin.4_k141_5842 ShaoY_2019_ERR3405110_bin.4_k141_5842_82 83529 85289 - 4.A.3.1.1
CAZyme ShaoY_2019_ERR3405110_bin.4_k141_5842 ShaoY_2019_ERR3405110_bin.4_k141_5842_83 85466 86908 - GH1
TF ShaoY_2019_ERR3405110_bin.4_k141_5842 ShaoY_2019_ERR3405110_bin.4_k141_5842_84 87250 88287 + LacI
CAZyme ShaoY_2019_ERR3405110_bin.4_k141_5842 ShaoY_2019_ERR3405110_bin.4_k141_5842_85 88492 89931 - GH1
TC ShaoY_2019_ERR3405110_bin.4_k141_5842 ShaoY_2019_ERR3405110_bin.4_k141_5842_86 89998 91773 - 4.A.3.1.1
TF ShaoY_2019_ERR3405110_bin.4_k141_5842 ShaoY_2019_ERR3405110_bin.4_k141_5842_87 92131 93135 + LacI
TC ShaoY_2019_ERR3405110_bin.4_k141_5842 ShaoY_2019_ERR3405110_bin.4_k141_5842_88 93350 93688 + 4.A.3.1.2
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_79
Type: CAZyme
Location: 78803 - 80224 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_80
Type: TC
Location: 80301 - 82064 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_81
Type: TF
Location: 82340 - 83350 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_82
Type: TC
Location: 83529 - 85289 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_83
Type: CAZyme
Location: 85466 - 86908 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_84
Type: TF
Location: 87250 - 88287 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_85
Type: CAZyme
Location: 88492 - 89931 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_86
Type: TC
Location: 89998 - 91773 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_87
Type: TF
Location: 92131 - 93135 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_88
Type: TC
Location: 93350 - 93688 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List