Cluster: ShaoY_2019_ERR3405110_bin.4_CGC14
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405110_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405110_bin.4_k141_5842 | ShaoY_2019_ERR3405110_bin.4_k141_5842_62 | 64618 | 65061 | + | 4.A.6.1.16 |
| pfam | ShaoY_2019_ERR3405110_bin.4_k141_5842 | ShaoY_2019_ERR3405110_bin.4_k141_5842_63 | 65061 | 65342 | + | YajC |
| TC | ShaoY_2019_ERR3405110_bin.4_k141_5842 | ShaoY_2019_ERR3405110_bin.4_k141_5842_64 | 65379 | 65861 | + | 4.A.6.1.4 |
| TC | ShaoY_2019_ERR3405110_bin.4_k141_5842 | ShaoY_2019_ERR3405110_bin.4_k141_5842_65 | 65952 | 66752 | + | 4.A.6.1.4 |
| TC | ShaoY_2019_ERR3405110_bin.4_k141_5842 | ShaoY_2019_ERR3405110_bin.4_k141_5842_66 | 66742 | 67824 | + | 4.A.6.1.4 |
| TF | ShaoY_2019_ERR3405110_bin.4_k141_5842 | ShaoY_2019_ERR3405110_bin.4_k141_5842_67 | 68010 | 68741 | + | GntR |
| STP | ShaoY_2019_ERR3405110_bin.4_k141_5842 | ShaoY_2019_ERR3405110_bin.4_k141_5842_68 | 68856 | 70022 | + | SIS | SIS |
| CAZyme | ShaoY_2019_ERR3405110_bin.4_k141_5842 | ShaoY_2019_ERR3405110_bin.4_k141_5842_69 | 70143 | 71312 | + | CE9 |
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_62
Type: TC
Location: 64618 - 65061 (+)
Type: TC
Location: 64618 - 65061 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_63
Type: pfam
Location: 65061 - 65342 (+)
Type: pfam
Location: 65061 - 65342 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_64
Type: TC
Location: 65379 - 65861 (+)
Type: TC
Location: 65379 - 65861 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_65
Type: TC
Location: 65952 - 66752 (+)
Type: TC
Location: 65952 - 66752 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_66
Type: TC
Location: 66742 - 67824 (+)
Type: TC
Location: 66742 - 67824 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_67
Type: TF
Location: 68010 - 68741 (+)
Type: TF
Location: 68010 - 68741 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_68
Type: STP
Location: 68856 - 70022 (+)
Type: STP
Location: 68856 - 70022 (+)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5842_69
Type: CAZyme
Location: 70143 - 71312 (+)
Type: CAZyme
Location: 70143 - 71312 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905204415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405110_bin.4_k141_5842_62 | vegan > omnivore | 1.00182 | 0.00364 |
| ShaoY_2019_ERR3405110_bin.4_k141_5842_63 | vegan > omnivore | 1.10442 | 0.00364 |