Cluster: ShaoY_2019_ERR3405110_bin.4_CGC11
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405110_bin.4
- CGC Family ID: CGCFAM_00006
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405110_bin.4_k141_5674 | ShaoY_2019_ERR3405110_bin.4_k141_5674_60 | 67977 | 68873 | - | GT101 |
| pfam | ShaoY_2019_ERR3405110_bin.4_k141_5674 | ShaoY_2019_ERR3405110_bin.4_k141_5674_61 | 68913 | 69635 | - | Hexapep | Hexapep_2 |
| pfam | ShaoY_2019_ERR3405110_bin.4_k141_5674 | ShaoY_2019_ERR3405110_bin.4_k141_5674_62 | 69625 | 70866 | - | Wzy_C |
| CAZyme | ShaoY_2019_ERR3405110_bin.4_k141_5674 | ShaoY_2019_ERR3405110_bin.4_k141_5674_63 | 71232 | 72272 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3405110_bin.4_k141_5674 | ShaoY_2019_ERR3405110_bin.4_k141_5674_64 | 72269 | 73339 | - | GT4 |
| pfam | ShaoY_2019_ERR3405110_bin.4_k141_5674 | ShaoY_2019_ERR3405110_bin.4_k141_5674_65 | 73349 | 74494 | - | Radical_SAM | SPASM |
| CAZyme | ShaoY_2019_ERR3405110_bin.4_k141_5674 | ShaoY_2019_ERR3405110_bin.4_k141_5674_66 | 74500 | 75795 | - | GT4 |
| CAZyme | ShaoY_2019_ERR3405110_bin.4_k141_5674 | ShaoY_2019_ERR3405110_bin.4_k141_5674_67 | 75792 | 76916 | - | GT4 |
| TC | ShaoY_2019_ERR3405110_bin.4_k141_5674 | ShaoY_2019_ERR3405110_bin.4_k141_5674_68 | 76917 | 77678 | - | 9.B.18.1.2 |
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5674_60
Type: CAZyme
Location: 67977 - 68873 (-)
Type: CAZyme
Location: 67977 - 68873 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5674_61
Type: pfam
Location: 68913 - 69635 (-)
Type: pfam
Location: 68913 - 69635 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5674_62
Type: pfam
Location: 69625 - 70866 (-)
Type: pfam
Location: 69625 - 70866 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5674_63
Type: CAZyme
Location: 71232 - 72272 (-)
Type: CAZyme
Location: 71232 - 72272 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5674_64
Type: CAZyme
Location: 72269 - 73339 (-)
Type: CAZyme
Location: 72269 - 73339 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5674_65
Type: pfam
Location: 73349 - 74494 (-)
Type: pfam
Location: 73349 - 74494 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5674_66
Type: CAZyme
Location: 74500 - 75795 (-)
Type: CAZyme
Location: 74500 - 75795 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5674_67
Type: CAZyme
Location: 75792 - 76916 (-)
Type: CAZyme
Location: 75792 - 76916 (-)
Gene ID: ShaoY_2019_ERR3405110_bin.4_k141_5674_68
Type: TC
Location: 76917 - 77678 (-)
Type: TC
Location: 76917 - 77678 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905204415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405110_bin.4_k141_5674_65 | vegetarian > vegan | 1.25088 | 0.03653 |