Cluster: ShaoY_2019_ERR3405029_bin.11_CGC8
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405029_bin.11
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_15 | 14499 | 15206 | + | 1.C.82.1.1 |
| pfam | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_16 | 15334 | 16044 | - | Metallophos | Metallophos_2 |
| pfam | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_17 | 16041 | 17957 | - | Bmp |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_18 | 18051 | 18818 | - | 1.A.23.4.10 |
| pfam | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_19 | 18947 | 20977 | - | Metallophos | 5_nucleotid_C |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_20 | 21050 | 21844 | - | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_21 | 21837 | 22760 | - | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_22 | 22965 | 23945 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_23 | 24106 | 24891 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_24 | 25141 | 26544 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_25 | 26725 | 27288 | - | 4.A.1.2.6 |
| peptidase | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_26 | 27533 | 28435 | + | S09.UPW |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_27 | 28848 | 31208 | + | 9.A.8.1.6 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_28 | 31523 | 33187 | + | 4.A.1.1.3 |
| TF | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_29 | 33250 | 34002 | - | HTH_6 |
| CAZyme | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_30 | 34178 | 35551 | + | GH4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_31 | 35717 | 36469 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_32 | 36645 | 37841 | + | 2.A.1.2.18 |
| CAZyme | ShaoY_2019_ERR3405029_bin.11_k141_2320 | ShaoY_2019_ERR3405029_bin.11_k141_2320_33 | 37995 | 39371 | + | GH13_20 |
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_15
Type: TC
Location: 14499 - 15206 (+)
Type: TC
Location: 14499 - 15206 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_16
Type: pfam
Location: 15334 - 16044 (-)
Type: pfam
Location: 15334 - 16044 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_17
Type: pfam
Location: 16041 - 17957 (-)
Type: pfam
Location: 16041 - 17957 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_18
Type: TC
Location: 18051 - 18818 (-)
Type: TC
Location: 18051 - 18818 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_19
Type: pfam
Location: 18947 - 20977 (-)
Type: pfam
Location: 18947 - 20977 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_20
Type: TC
Location: 21050 - 21844 (-)
Type: TC
Location: 21050 - 21844 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_21
Type: TC
Location: 21837 - 22760 (-)
Type: TC
Location: 21837 - 22760 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_22
Type: TC
Location: 22965 - 23945 (-)
Type: TC
Location: 22965 - 23945 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_23
Type:
Location: 24106 - 24891 (-)
Type:
Location: 24106 - 24891 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_24
Type: pfam
Location: 25141 - 26544 (-)
Type: pfam
Location: 25141 - 26544 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_25
Type: TC
Location: 26725 - 27288 (-)
Type: TC
Location: 26725 - 27288 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_26
Type: peptidase
Location: 27533 - 28435 (+)
Type: peptidase
Location: 27533 - 28435 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_27
Type: TC
Location: 28848 - 31208 (+)
Type: TC
Location: 28848 - 31208 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_28
Type: TC
Location: 31523 - 33187 (+)
Type: TC
Location: 31523 - 33187 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_29
Type: TF
Location: 33250 - 34002 (-)
Type: TF
Location: 33250 - 34002 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_30
Type: CAZyme
Location: 34178 - 35551 (+)
Type: CAZyme
Location: 34178 - 35551 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_31
Type:
Location: 35717 - 36469 (+)
Type:
Location: 35717 - 36469 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_32
Type: TC
Location: 36645 - 37841 (+)
Type: TC
Location: 36645 - 37841 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_2320_33
Type: CAZyme
Location: 37995 - 39371 (+)
Type: CAZyme
Location: 37995 - 39371 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405029_bin.11_k141_2320_19 | vegan > omnivore | 1.84079 | 0.00701 |
| ShaoY_2019_ERR3405029_bin.11_k141_2320_19 | vegetarian > omnivore | 1.43098 | 0.01287 |
| ShaoY_2019_ERR3405029_bin.11_k141_2320_30 | vegan > omnivore | 1.47369 | 0.00701 |
| ShaoY_2019_ERR3405029_bin.11_k141_2320_31 | vegan > omnivore | 1.70212 | 0.00701 |