Cluster: ShaoY_2019_ERR3405029_bin.11_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405029_bin.11
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405029_bin.11_k141_758 | ShaoY_2019_ERR3405029_bin.11_k141_758_1 | 197 | 733 | - | 4.A.1.2.6 |
| pfam | ShaoY_2019_ERR3405029_bin.11_k141_758 | ShaoY_2019_ERR3405029_bin.11_k141_758_2 | 874 | 1719 | - | Hydrolase_3 |
| CAZyme | ShaoY_2019_ERR3405029_bin.11_k141_758 | ShaoY_2019_ERR3405029_bin.11_k141_758_3 | 1935 | 3362 | - | GH1 |
| TF | ShaoY_2019_ERR3405029_bin.11_k141_758 | ShaoY_2019_ERR3405029_bin.11_k141_758_4 | 3533 | 4525 | - | 0035607 |
| CAZyme | ShaoY_2019_ERR3405029_bin.11_k141_758 | ShaoY_2019_ERR3405029_bin.11_k141_758_5 | 4640 | 7231 | + | GH106 |
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_758_1
Type: TC
Location: 197 - 733 (-)
Type: TC
Location: 197 - 733 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_758_2
Type: pfam
Location: 874 - 1719 (-)
Type: pfam
Location: 874 - 1719 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_758_3
Type: CAZyme
Location: 1935 - 3362 (-)
Type: CAZyme
Location: 1935 - 3362 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_758_4
Type: TF
Location: 3533 - 4525 (-)
Type: TF
Location: 3533 - 4525 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_758_5
Type: CAZyme
Location: 4640 - 7231 (+)
Type: CAZyme
Location: 4640 - 7231 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.