Cluster: ShaoY_2019_ERR3405029_bin.11_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405029_bin.11
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405029_bin.11_k141_517 | ShaoY_2019_ERR3405029_bin.11_k141_517_13 | 14223 | 15242 | + | 9.B.146.1.6 |
| pfam | ShaoY_2019_ERR3405029_bin.11_k141_517 | ShaoY_2019_ERR3405029_bin.11_k141_517_14 | 15252 | 16658 | + | Mur_ligase_C | Mur_ligase_M |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_517 | ShaoY_2019_ERR3405029_bin.11_k141_517_15 | 16695 | 18188 | + | 2.A.103.1.1 |
| CAZyme | ShaoY_2019_ERR3405029_bin.11_k141_517 | ShaoY_2019_ERR3405029_bin.11_k141_517_16 | 18178 | 19293 | + | GT28 |
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_517_13
Type: TC
Location: 14223 - 15242 (+)
Type: TC
Location: 14223 - 15242 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_517_14
Type: pfam
Location: 15252 - 16658 (+)
Type: pfam
Location: 15252 - 16658 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_517_15
Type: TC
Location: 16695 - 18188 (+)
Type: TC
Location: 16695 - 18188 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_517_16
Type: CAZyme
Location: 18178 - 19293 (+)
Type: CAZyme
Location: 18178 - 19293 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.