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Cluster: ShaoY_2019_ERR3405029_bin.11_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405029_bin.11_k141_339 ShaoY_2019_ERR3405029_bin.11_k141_339_65 64211 65095 - CE7
TC ShaoY_2019_ERR3405029_bin.11_k141_339 ShaoY_2019_ERR3405029_bin.11_k141_339_66 65269 66096 - 3.A.1.5.27
TC ShaoY_2019_ERR3405029_bin.11_k141_339 ShaoY_2019_ERR3405029_bin.11_k141_339_67 66097 68112 - 3.A.1.5.25
TC ShaoY_2019_ERR3405029_bin.11_k141_339 ShaoY_2019_ERR3405029_bin.11_k141_339_68 68116 69072 - 3.A.1.5.38
TC ShaoY_2019_ERR3405029_bin.11_k141_339 ShaoY_2019_ERR3405029_bin.11_k141_339_69 69228 70841 - 3.A.1.5.27
pfam ShaoY_2019_ERR3405029_bin.11_k141_339 ShaoY_2019_ERR3405029_bin.11_k141_339_70 71207 73147 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC ShaoY_2019_ERR3405029_bin.11_k141_339 ShaoY_2019_ERR3405029_bin.11_k141_339_71 73154 74836 - 2.A.66.4.4
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_339_65
Type: CAZyme
Location: 64211 - 65095 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_339_66
Type: TC
Location: 65269 - 66096 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_339_67
Type: TC
Location: 66097 - 68112 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_339_68
Type: TC
Location: 68116 - 69072 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_339_69
Type: TC
Location: 69228 - 70841 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_339_70
Type: pfam
Location: 71207 - 73147 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_339_71
Type: TC
Location: 73154 - 74836 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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