Cluster: ShaoY_2019_ERR3405029_bin.11_CGC17
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405029_bin.11
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405029_bin.11_k141_6320 | ShaoY_2019_ERR3405029_bin.11_k141_6320_99 | 130322 | 131704 | - | GH4 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_6320 | ShaoY_2019_ERR3405029_bin.11_k141_6320_100 | 131708 | 133324 | - | 4.A.1.1.3 |
| pfam | ShaoY_2019_ERR3405029_bin.11_k141_6320 | ShaoY_2019_ERR3405029_bin.11_k141_6320_101 | 133424 | 134290 | - | PRD | PRD | CAT_RBD |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_6320 | ShaoY_2019_ERR3405029_bin.11_k141_6320_102 | 134297 | 134809 | - | 4.A.1.2.5 |
| STP | ShaoY_2019_ERR3405029_bin.11_k141_6320 | ShaoY_2019_ERR3405029_bin.11_k141_6320_103 | 135090 | 135851 | - | Fer4 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_6320 | ShaoY_2019_ERR3405029_bin.11_k141_6320_104 | 136473 | 138728 | - | 1.I.1.1.3 |
| STP | ShaoY_2019_ERR3405029_bin.11_k141_6320 | ShaoY_2019_ERR3405029_bin.11_k141_6320_105 | 139308 | 140270 | + | FHA |
| STP | ShaoY_2019_ERR3405029_bin.11_k141_6320 | ShaoY_2019_ERR3405029_bin.11_k141_6320_106 | 140442 | 142526 | + | Pkinase |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_6320 | ShaoY_2019_ERR3405029_bin.11_k141_6320_107 | 143100 | 145439 | + | 3.A.3.5.15 |
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6320_99
Type: CAZyme
Location: 130322 - 131704 (-)
Type: CAZyme
Location: 130322 - 131704 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6320_100
Type: TC
Location: 131708 - 133324 (-)
Type: TC
Location: 131708 - 133324 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6320_101
Type: pfam
Location: 133424 - 134290 (-)
Type: pfam
Location: 133424 - 134290 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6320_102
Type: TC
Location: 134297 - 134809 (-)
Type: TC
Location: 134297 - 134809 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6320_103
Type: STP
Location: 135090 - 135851 (-)
Type: STP
Location: 135090 - 135851 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6320_104
Type: TC
Location: 136473 - 138728 (-)
Type: TC
Location: 136473 - 138728 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6320_105
Type: STP
Location: 139308 - 140270 (+)
Type: STP
Location: 139308 - 140270 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6320_106
Type: STP
Location: 140442 - 142526 (+)
Type: STP
Location: 140442 - 142526 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6320_107
Type: TC
Location: 143100 - 145439 (+)
Type: TC
Location: 143100 - 145439 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.