Cluster: ShaoY_2019_ERR3405029_bin.11_CGC16
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405029_bin.11
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405029_bin.11_k141_6110 | ShaoY_2019_ERR3405029_bin.11_k141_6110_38 | 57375 | 58619 | - | GT4 |
| pfam | ShaoY_2019_ERR3405029_bin.11_k141_6110 | ShaoY_2019_ERR3405029_bin.11_k141_6110_39 | 58636 | 59400 | - | BcrAD_BadFG |
| pfam | ShaoY_2019_ERR3405029_bin.11_k141_6110 | ShaoY_2019_ERR3405029_bin.11_k141_6110_40 | 59452 | 60615 | - | HGD-D |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_6110 | ShaoY_2019_ERR3405029_bin.11_k141_6110_41 | 60693 | 61478 | - | 3.A.1.5.36 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_6110 | ShaoY_2019_ERR3405029_bin.11_k141_6110_42 | 61465 | 62463 | - | 3.A.1.5.35 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_6110 | ShaoY_2019_ERR3405029_bin.11_k141_6110_43 | 62467 | 63294 | - | 3.A.1.5.39 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_6110 | ShaoY_2019_ERR3405029_bin.11_k141_6110_44 | 63294 | 64247 | - | 3.A.1.5.11 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_6110 | ShaoY_2019_ERR3405029_bin.11_k141_6110_45 | 64334 | 65944 | - | 3.A.1.5.11 |
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6110_38
Type: CAZyme
Location: 57375 - 58619 (-)
Type: CAZyme
Location: 57375 - 58619 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6110_39
Type: pfam
Location: 58636 - 59400 (-)
Type: pfam
Location: 58636 - 59400 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6110_40
Type: pfam
Location: 59452 - 60615 (-)
Type: pfam
Location: 59452 - 60615 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6110_41
Type: TC
Location: 60693 - 61478 (-)
Type: TC
Location: 60693 - 61478 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6110_42
Type: TC
Location: 61465 - 62463 (-)
Type: TC
Location: 61465 - 62463 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6110_43
Type: TC
Location: 62467 - 63294 (-)
Type: TC
Location: 62467 - 63294 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6110_44
Type: TC
Location: 63294 - 64247 (-)
Type: TC
Location: 63294 - 64247 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_6110_45
Type: TC
Location: 64334 - 65944 (-)
Type: TC
Location: 64334 - 65944 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405029_bin.11_k141_6110_41 | vegan > omnivore | 2.60609 | 0.00701 |
| ShaoY_2019_ERR3405029_bin.11_k141_6110_42 | vegan > omnivore | 1.24473 | 0.00701 |
| ShaoY_2019_ERR3405029_bin.11_k141_6110_43 | vegan > omnivore | 2.83788 | 0.00701 |
| ShaoY_2019_ERR3405029_bin.11_k141_6110_44 | vegan > omnivore | 2.65688 | 0.00701 |
| ShaoY_2019_ERR3405029_bin.11_k141_6110_45 | vegan > omnivore | 2.96662 | 0.00701 |