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Cluster: ShaoY_2019_ERR3405029_bin.11_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405029_bin.11_k141_4833 ShaoY_2019_ERR3405029_bin.11_k141_4833_6 4877 5215 - 4.A.3.1.2
TF ShaoY_2019_ERR3405029_bin.11_k141_4833 ShaoY_2019_ERR3405029_bin.11_k141_4833_7 5429 6433 - LacI
TC ShaoY_2019_ERR3405029_bin.11_k141_4833 ShaoY_2019_ERR3405029_bin.11_k141_4833_8 6790 8565 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3405029_bin.11_k141_4833 ShaoY_2019_ERR3405029_bin.11_k141_4833_9 8763 10202 + GH1
TF ShaoY_2019_ERR3405029_bin.11_k141_4833 ShaoY_2019_ERR3405029_bin.11_k141_4833_10 10465 11502 - LacI
CAZyme ShaoY_2019_ERR3405029_bin.11_k141_4833 ShaoY_2019_ERR3405029_bin.11_k141_4833_11 11844 13286 + GH1
TC ShaoY_2019_ERR3405029_bin.11_k141_4833 ShaoY_2019_ERR3405029_bin.11_k141_4833_12 13463 15223 + 4.A.3.1.1
TF ShaoY_2019_ERR3405029_bin.11_k141_4833 ShaoY_2019_ERR3405029_bin.11_k141_4833_13 15397 16455 - LacI
TC ShaoY_2019_ERR3405029_bin.11_k141_4833 ShaoY_2019_ERR3405029_bin.11_k141_4833_14 16684 18462 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3405029_bin.11_k141_4833 ShaoY_2019_ERR3405029_bin.11_k141_4833_15 18538 19959 + GH1
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4833_6
Type: TC
Location: 4877 - 5215 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4833_7
Type: TF
Location: 5429 - 6433 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4833_8
Type: TC
Location: 6790 - 8565 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4833_9
Type: CAZyme
Location: 8763 - 10202 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4833_10
Type: TF
Location: 10465 - 11502 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4833_11
Type: CAZyme
Location: 11844 - 13286 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4833_12
Type: TC
Location: 13463 - 15223 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4833_13
Type: TF
Location: 15397 - 16455 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4833_14
Type: TC
Location: 16684 - 18462 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4833_15
Type: CAZyme
Location: 18538 - 19959 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405029_bin.11_k141_4833_10 vegetarian > omnivore 1.01805 0.01631

🧭 Explore Read Mapping of CGC

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