Cluster: ShaoY_2019_ERR3405029_bin.11_CGC10
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405029_bin.11
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405029_bin.11_k141_4363 | ShaoY_2019_ERR3405029_bin.11_k141_4363_69 | 83251 | 83577 | + | 4.A.3.2.7 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_4363 | ShaoY_2019_ERR3405029_bin.11_k141_4363_70 | 83624 | 83917 | + | 4.A.3.2.6 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_4363 | ShaoY_2019_ERR3405029_bin.11_k141_4363_71 | 83927 | 85276 | + | 4.A.3.2.6 |
| CAZyme | ShaoY_2019_ERR3405029_bin.11_k141_4363 | ShaoY_2019_ERR3405029_bin.11_k141_4363_72 | 85278 | 86732 | + | GH1 |
| pfam | ShaoY_2019_ERR3405029_bin.11_k141_4363 | ShaoY_2019_ERR3405029_bin.11_k141_4363_73 | 87243 | 88373 | - | Peptidase_C70 | Peptidase_C39_2 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_4363 | ShaoY_2019_ERR3405029_bin.11_k141_4363_74 | 88571 | 90049 | - | 2.A.118.1.1 |
| pfam | ShaoY_2019_ERR3405029_bin.11_k141_4363 | ShaoY_2019_ERR3405029_bin.11_k141_4363_75 | 90481 | 91488 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| pfam | ShaoY_2019_ERR3405029_bin.11_k141_4363 | ShaoY_2019_ERR3405029_bin.11_k141_4363_76 | 91610 | 92467 | - | ADI | ADI | DDAH_eukar |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_4363 | ShaoY_2019_ERR3405029_bin.11_k141_4363_77 | 92580 | 94097 | - | 2.A.118.1.6 |
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4363_69
Type: TC
Location: 83251 - 83577 (+)
Type: TC
Location: 83251 - 83577 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4363_70
Type: TC
Location: 83624 - 83917 (+)
Type: TC
Location: 83624 - 83917 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4363_71
Type: TC
Location: 83927 - 85276 (+)
Type: TC
Location: 83927 - 85276 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4363_72
Type: CAZyme
Location: 85278 - 86732 (+)
Type: CAZyme
Location: 85278 - 86732 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4363_73
Type: pfam
Location: 87243 - 88373 (-)
Type: pfam
Location: 87243 - 88373 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4363_74
Type: TC
Location: 88571 - 90049 (-)
Type: TC
Location: 88571 - 90049 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4363_75
Type: pfam
Location: 90481 - 91488 (-)
Type: pfam
Location: 90481 - 91488 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4363_76
Type: pfam
Location: 91610 - 92467 (-)
Type: pfam
Location: 91610 - 92467 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_4363_77
Type: TC
Location: 92580 - 94097 (-)
Type: TC
Location: 92580 - 94097 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405029_bin.11_k141_4363_72 | vegetarian > vegan | 2.19626 | 0.03330 |