Cluster: ShaoY_2019_ERR3405029_bin.11_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405029_bin.11
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405029_bin.11_k141_287 | ShaoY_2019_ERR3405029_bin.11_k141_287_11 | 15206 | 17656 | - | 4.A.1.1.8 |
| TF | ShaoY_2019_ERR3405029_bin.11_k141_287 | ShaoY_2019_ERR3405029_bin.11_k141_287_12 | 17886 | 18605 | + | GntR |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_287 | ShaoY_2019_ERR3405029_bin.11_k141_287_13 | 18912 | 20228 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_287 | ShaoY_2019_ERR3405029_bin.11_k141_287_14 | 20316 | 21170 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_287 | ShaoY_2019_ERR3405029_bin.11_k141_287_15 | 21170 | 22009 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3405029_bin.11_k141_287 | ShaoY_2019_ERR3405029_bin.11_k141_287_16 | 22078 | 23277 | + | 3.A.1.1.22 |
| CAZyme | ShaoY_2019_ERR3405029_bin.11_k141_287 | ShaoY_2019_ERR3405029_bin.11_k141_287_17 | 23729 | 25996 | - | GT35 |
| CAZyme | ShaoY_2019_ERR3405029_bin.11_k141_287 | ShaoY_2019_ERR3405029_bin.11_k141_287_18 | 26125 | 27630 | - | GH77 |
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_287_11
Type: TC
Location: 15206 - 17656 (-)
Type: TC
Location: 15206 - 17656 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_287_12
Type: TF
Location: 17886 - 18605 (+)
Type: TF
Location: 17886 - 18605 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_287_13
Type: TC
Location: 18912 - 20228 (+)
Type: TC
Location: 18912 - 20228 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_287_14
Type: TC
Location: 20316 - 21170 (+)
Type: TC
Location: 20316 - 21170 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_287_15
Type: TC
Location: 21170 - 22009 (+)
Type: TC
Location: 21170 - 22009 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_287_16
Type: TC
Location: 22078 - 23277 (+)
Type: TC
Location: 22078 - 23277 (+)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_287_17
Type: CAZyme
Location: 23729 - 25996 (-)
Type: CAZyme
Location: 23729 - 25996 (-)
Gene ID: ShaoY_2019_ERR3405029_bin.11_k141_287_18
Type: CAZyme
Location: 26125 - 27630 (-)
Type: CAZyme
Location: 26125 - 27630 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.