Cluster: ShaoY_2019_ERR3405005_bin.8_CGC9
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405005_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405005_bin.8_k141_3128 | ShaoY_2019_ERR3405005_bin.8_k141_3128_3 | 884 | 2362 | - | GH19_1 |
| TC | ShaoY_2019_ERR3405005_bin.8_k141_3128 | ShaoY_2019_ERR3405005_bin.8_k141_3128_4 | 2370 | 4622 | - | 3.A.23.1.1 |
| TC | ShaoY_2019_ERR3405005_bin.8_k141_3128 | ShaoY_2019_ERR3405005_bin.8_k141_3128_5 | 4783 | 5493 | + | 3.A.23.1.1 |
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_3128_3
Type: CAZyme
Location: 884 - 2362 (-)
Type: CAZyme
Location: 884 - 2362 (-)
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_3128_4
Type: TC
Location: 2370 - 4622 (-)
Type: TC
Location: 2370 - 4622 (-)
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_3128_5
Type: TC
Location: 4783 - 5493 (+)
Type: TC
Location: 4783 - 5493 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405005_bin.8_k141_3128_4 | vegetarian > vegan | 1.50918 | 0.03161 |