Cluster: ShaoY_2019_ERR3405005_bin.8_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405005_bin.8
- CGC Family ID: CGCFAM_00382
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405005_bin.8_k141_1899 | ShaoY_2019_ERR3405005_bin.8_k141_1899_3 | 2185 | 2985 | + | GT111 |
| pfam | ShaoY_2019_ERR3405005_bin.8_k141_1899 | ShaoY_2019_ERR3405005_bin.8_k141_1899_4 | 2988 | 3797 | + | LicD |
| CAZyme | ShaoY_2019_ERR3405005_bin.8_k141_1899 | ShaoY_2019_ERR3405005_bin.8_k141_1899_5 | 3799 | 4848 | + | GT2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405005_bin.8_k141_1899 | ShaoY_2019_ERR3405005_bin.8_k141_1899_6 | 4858 | 6012 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405005_bin.8_k141_1899 | ShaoY_2019_ERR3405005_bin.8_k141_1899_7 | 6016 | 7467 | + | 2.A.66.2.16 |
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_1899_3
Type: CAZyme
Location: 2185 - 2985 (+)
Type: CAZyme
Location: 2185 - 2985 (+)
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_1899_4
Type: pfam
Location: 2988 - 3797 (+)
Type: pfam
Location: 2988 - 3797 (+)
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_1899_5
Type: CAZyme
Location: 3799 - 4848 (+)
Type: CAZyme
Location: 3799 - 4848 (+)
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_1899_6
Type:
Location: 4858 - 6012 (+)
Type:
Location: 4858 - 6012 (+)
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_1899_7
Type: TC
Location: 6016 - 7467 (+)
Type: TC
Location: 6016 - 7467 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.