Cluster: ShaoY_2019_ERR3405005_bin.8_CGC11
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405005_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405005_bin.8_k141_4263 | ShaoY_2019_ERR3405005_bin.8_k141_4263_1 | 3 | 335 | + | 4.A.1.1.1 |
| pfam | ShaoY_2019_ERR3405005_bin.8_k141_4263 | ShaoY_2019_ERR3405005_bin.8_k141_4263_2 | 408 | 1607 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | ShaoY_2019_ERR3405005_bin.8_k141_4263 | ShaoY_2019_ERR3405005_bin.8_k141_4263_3 | 1728 | 2900 | + | GH2 |
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_4263_1
Type: TC
Location: 3 - 335 (+)
Type: TC
Location: 3 - 335 (+)
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_4263_2
Type: pfam
Location: 408 - 1607 (+)
Type: pfam
Location: 408 - 1607 (+)
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_4263_3
Type: CAZyme
Location: 1728 - 2900 (+)
Type: CAZyme
Location: 1728 - 2900 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.