Cluster: ShaoY_2019_ERR3405005_bin.8_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405005_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405005_bin.8_k141_837 | ShaoY_2019_ERR3405005_bin.8_k141_837_27 | 23303 | 24688 | - | 2.A.47.5.2 |
| TC | ShaoY_2019_ERR3405005_bin.8_k141_837 | ShaoY_2019_ERR3405005_bin.8_k141_837_28 | 24844 | 26070 | - | 2.A.1.12.1 |
| TF | ShaoY_2019_ERR3405005_bin.8_k141_837 | ShaoY_2019_ERR3405005_bin.8_k141_837_29 | 26245 | 26955 | + | GntR |
| pfam | ShaoY_2019_ERR3405005_bin.8_k141_837 | ShaoY_2019_ERR3405005_bin.8_k141_837_30 | 26945 | 28018 | + | GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3 |
| CAZyme | ShaoY_2019_ERR3405005_bin.8_k141_837 | ShaoY_2019_ERR3405005_bin.8_k141_837_31 | 28029 | 29135 | + | GH177 |
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_837_27
Type: TC
Location: 23303 - 24688 (-)
Type: TC
Location: 23303 - 24688 (-)
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_837_28
Type: TC
Location: 24844 - 26070 (-)
Type: TC
Location: 24844 - 26070 (-)
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_837_29
Type: TF
Location: 26245 - 26955 (+)
Type: TF
Location: 26245 - 26955 (+)
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_837_30
Type: pfam
Location: 26945 - 28018 (+)
Type: pfam
Location: 26945 - 28018 (+)
Gene ID: ShaoY_2019_ERR3405005_bin.8_k141_837_31
Type: CAZyme
Location: 28029 - 29135 (+)
Type: CAZyme
Location: 28029 - 29135 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.