Cluster: ShaoY_2019_ERR3405000_bin.13_CGC11
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405000_bin.13
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405000_bin.13_k141_7476 | ShaoY_2019_ERR3405000_bin.13_k141_7476_137 | 167269 | 168063 | - | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3405000_bin.13_k141_7476 | ShaoY_2019_ERR3405000_bin.13_k141_7476_138 | 168056 | 168979 | - | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3405000_bin.13_k141_7476 | ShaoY_2019_ERR3405000_bin.13_k141_7476_139 | 169183 | 170163 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405000_bin.13_k141_7476 | ShaoY_2019_ERR3405000_bin.13_k141_7476_140 | 170324 | 171109 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405000_bin.13_k141_7476 | ShaoY_2019_ERR3405000_bin.13_k141_7476_141 | 171370 | 172773 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | ShaoY_2019_ERR3405000_bin.13_k141_7476 | ShaoY_2019_ERR3405000_bin.13_k141_7476_142 | 172954 | 173517 | - | 4.A.1.2.6 |
| peptidase | ShaoY_2019_ERR3405000_bin.13_k141_7476 | ShaoY_2019_ERR3405000_bin.13_k141_7476_143 | 173762 | 174664 | + | S09.UPW |
| TC | ShaoY_2019_ERR3405000_bin.13_k141_7476 | ShaoY_2019_ERR3405000_bin.13_k141_7476_144 | 175009 | 177369 | + | 9.A.8.1.6 |
| TC | ShaoY_2019_ERR3405000_bin.13_k141_7476 | ShaoY_2019_ERR3405000_bin.13_k141_7476_145 | 177490 | 178686 | + | 2.A.1.2.18 |
| CAZyme | ShaoY_2019_ERR3405000_bin.13_k141_7476 | ShaoY_2019_ERR3405000_bin.13_k141_7476_146 | 178840 | 180216 | + | GH13_20 |
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_7476_137
Type: TC
Location: 167269 - 168063 (-)
Type: TC
Location: 167269 - 168063 (-)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_7476_138
Type: TC
Location: 168056 - 168979 (-)
Type: TC
Location: 168056 - 168979 (-)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_7476_139
Type: TC
Location: 169183 - 170163 (-)
Type: TC
Location: 169183 - 170163 (-)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_7476_140
Type:
Location: 170324 - 171109 (-)
Type:
Location: 170324 - 171109 (-)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_7476_141
Type: pfam
Location: 171370 - 172773 (-)
Type: pfam
Location: 171370 - 172773 (-)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_7476_142
Type: TC
Location: 172954 - 173517 (-)
Type: TC
Location: 172954 - 173517 (-)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_7476_143
Type: peptidase
Location: 173762 - 174664 (+)
Type: peptidase
Location: 173762 - 174664 (+)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_7476_144
Type: TC
Location: 175009 - 177369 (+)
Type: TC
Location: 175009 - 177369 (+)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_7476_145
Type: TC
Location: 177490 - 178686 (+)
Type: TC
Location: 177490 - 178686 (+)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_7476_146
Type: CAZyme
Location: 178840 - 180216 (+)
Type: CAZyme
Location: 178840 - 180216 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.