Cluster: ShaoY_2019_ERR3405000_bin.13_CGC1
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405000_bin.13
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405000_bin.13_k141_284 | ShaoY_2019_ERR3405000_bin.13_k141_284_7 | 5295 | 5633 | - | 4.A.3.1.2 |
| TF | ShaoY_2019_ERR3405000_bin.13_k141_284 | ShaoY_2019_ERR3405000_bin.13_k141_284_8 | 5848 | 6852 | - | LacI |
| TC | ShaoY_2019_ERR3405000_bin.13_k141_284 | ShaoY_2019_ERR3405000_bin.13_k141_284_9 | 7210 | 8973 | + | 4.A.3.1.1 |
| CAZyme | ShaoY_2019_ERR3405000_bin.13_k141_284 | ShaoY_2019_ERR3405000_bin.13_k141_284_10 | 9040 | 10479 | + | GH1 |
| TF | ShaoY_2019_ERR3405000_bin.13_k141_284 | ShaoY_2019_ERR3405000_bin.13_k141_284_11 | 10747 | 11784 | - | LacI |
| CAZyme | ShaoY_2019_ERR3405000_bin.13_k141_284 | ShaoY_2019_ERR3405000_bin.13_k141_284_12 | 12126 | 13568 | + | GH1 |
| TC | ShaoY_2019_ERR3405000_bin.13_k141_284 | ShaoY_2019_ERR3405000_bin.13_k141_284_13 | 13744 | 15504 | + | 4.A.3.1.1 |
| TF | ShaoY_2019_ERR3405000_bin.13_k141_284 | ShaoY_2019_ERR3405000_bin.13_k141_284_14 | 15678 | 16688 | - | LacI |
| TC | ShaoY_2019_ERR3405000_bin.13_k141_284 | ShaoY_2019_ERR3405000_bin.13_k141_284_15 | 16964 | 18745 | + | 4.A.3.1.1 |
| CAZyme | ShaoY_2019_ERR3405000_bin.13_k141_284 | ShaoY_2019_ERR3405000_bin.13_k141_284_16 | 18821 | 20242 | + | GH1 |
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_284_7
Type: TC
Location: 5295 - 5633 (-)
Type: TC
Location: 5295 - 5633 (-)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_284_8
Type: TF
Location: 5848 - 6852 (-)
Type: TF
Location: 5848 - 6852 (-)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_284_9
Type: TC
Location: 7210 - 8973 (+)
Type: TC
Location: 7210 - 8973 (+)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_284_10
Type: CAZyme
Location: 9040 - 10479 (+)
Type: CAZyme
Location: 9040 - 10479 (+)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_284_11
Type: TF
Location: 10747 - 11784 (-)
Type: TF
Location: 10747 - 11784 (-)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_284_12
Type: CAZyme
Location: 12126 - 13568 (+)
Type: CAZyme
Location: 12126 - 13568 (+)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_284_13
Type: TC
Location: 13744 - 15504 (+)
Type: TC
Location: 13744 - 15504 (+)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_284_14
Type: TF
Location: 15678 - 16688 (-)
Type: TF
Location: 15678 - 16688 (-)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_284_15
Type: TC
Location: 16964 - 18745 (+)
Type: TC
Location: 16964 - 18745 (+)
Gene ID: ShaoY_2019_ERR3405000_bin.13_k141_284_16
Type: CAZyme
Location: 18821 - 20242 (+)
Type: CAZyme
Location: 18821 - 20242 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.