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Cluster: ShaoY_2019_ERR3404958_bin.2_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404958_bin.2_k141_919 ShaoY_2019_ERR3404958_bin.2_k141_919_28 29608 31395 + GH35
TC ShaoY_2019_ERR3404958_bin.2_k141_919 ShaoY_2019_ERR3404958_bin.2_k141_919_29 31392 31868 + 4.A.6.1.18
TC ShaoY_2019_ERR3404958_bin.2_k141_919 ShaoY_2019_ERR3404958_bin.2_k141_919_30 31895 32809 + 4.A.6.1.18
TC ShaoY_2019_ERR3404958_bin.2_k141_919 ShaoY_2019_ERR3404958_bin.2_k141_919_31 32796 33614 + 4.A.6.1.18
TC ShaoY_2019_ERR3404958_bin.2_k141_919 ShaoY_2019_ERR3404958_bin.2_k141_919_32 33626 34030 + 4.A.6.1.18
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_28
Type: CAZyme
Location: 29608 - 31395 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_29
Type: TC
Location: 31392 - 31868 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_30
Type: TC
Location: 31895 - 32809 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_31
Type: TC
Location: 32796 - 33614 (+)
Gene ID: ShaoY_2019_ERR3404958_bin.2_k141_919_32
Type: TC
Location: 33626 - 34030 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3404958_bin.2_k141_919_29 vegan > omnivore 4.60930 0.00732
ShaoY_2019_ERR3404958_bin.2_k141_919_29 vegetarian > omnivore 4.43319 0.00266
ShaoY_2019_ERR3404958_bin.2_k141_919_31 vegan > omnivore 1.33294 0.00732

🧭 Explore Read Mapping of CGC

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