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Cluster: ShaoY_2019_ERR3404937_bin.4_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404937_bin.4_k141_1434 ShaoY_2019_ERR3404937_bin.4_k141_1434_33 46984 49113 + 3.A.1.119.1
TC ShaoY_2019_ERR3404937_bin.4_k141_1434 ShaoY_2019_ERR3404937_bin.4_k141_1434_34 49110 50897 + 3.A.1.119.1
STP ShaoY_2019_ERR3404937_bin.4_k141_1434 ShaoY_2019_ERR3404937_bin.4_k141_1434_35 50962 51690 + TetR_N
CAZyme ShaoY_2019_ERR3404937_bin.4_k141_1434 ShaoY_2019_ERR3404937_bin.4_k141_1434_36 51995 55279 + GH13_13
CAZyme ShaoY_2019_ERR3404937_bin.4_k141_1434 ShaoY_2019_ERR3404937_bin.4_k141_1434_37 55516 59427 + GH13_13
CAZyme ShaoY_2019_ERR3404937_bin.4_k141_1434 ShaoY_2019_ERR3404937_bin.4_k141_1434_38 59793 62684 + GH13_13
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1434_33
Type: TC
Location: 46984 - 49113 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1434_34
Type: TC
Location: 49110 - 50897 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1434_35
Type: STP
Location: 50962 - 51690 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1434_36
Type: CAZyme
Location: 51995 - 55279 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1434_37
Type: CAZyme
Location: 55516 - 59427 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1434_38
Type: CAZyme
Location: 59793 - 62684 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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