Cluster: ShaoY_2019_ERR3404937_bin.4_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404937_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404937_bin.4_k141_1434 | ShaoY_2019_ERR3404937_bin.4_k141_1434_15 | 18059 | 18919 | + | GT81 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404937_bin.4_k141_1434 | ShaoY_2019_ERR3404937_bin.4_k141_1434_16 | 19032 | 21839 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | ShaoY_2019_ERR3404937_bin.4_k141_1434 | ShaoY_2019_ERR3404937_bin.4_k141_1434_17 | 21920 | 22891 | + | ACT |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_1434 | ShaoY_2019_ERR3404937_bin.4_k141_1434_18 | 23064 | 24737 | - | 2.A.1.3.15 |
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1434_15
Type: CAZyme
Location: 18059 - 18919 (+)
Type: CAZyme
Location: 18059 - 18919 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1434_16
Type:
Location: 19032 - 21839 (-)
Type:
Location: 19032 - 21839 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1434_17
Type: STP
Location: 21920 - 22891 (+)
Type: STP
Location: 21920 - 22891 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1434_18
Type: TC
Location: 23064 - 24737 (-)
Type: TC
Location: 23064 - 24737 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Actinomyces
Species
Actinomyces haliotis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.