Cluster: ShaoY_2019_ERR3404937_bin.4_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404937_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404937_bin.4_k141_1418 | ShaoY_2019_ERR3404937_bin.4_k141_1418_29 | 31654 | 32841 | - | GT4 |
| pfam | ShaoY_2019_ERR3404937_bin.4_k141_1418 | ShaoY_2019_ERR3404937_bin.4_k141_1418_30 | 32838 | 33890 | - | Lip_A_acyltrans |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_1418 | ShaoY_2019_ERR3404937_bin.4_k141_1418_31 | 33887 | 34549 | - | 4.F.1.3.1 |
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1418_29
Type: CAZyme
Location: 31654 - 32841 (-)
Type: CAZyme
Location: 31654 - 32841 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1418_30
Type: pfam
Location: 32838 - 33890 (-)
Type: pfam
Location: 32838 - 33890 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1418_31
Type: TC
Location: 33887 - 34549 (-)
Type: TC
Location: 33887 - 34549 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Actinomyces
Species
Actinomyces haliotis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.