Cluster: ShaoY_2019_ERR3404937_bin.4_CGC26
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404937_bin.4
- CGC Family ID: CGCFAM_08136
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4649 | ShaoY_2019_ERR3404937_bin.4_k141_4649_169 | 220015 | 221553 | - | 3.A.1.110.7 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404937_bin.4_k141_4649 | ShaoY_2019_ERR3404937_bin.4_k141_4649_170 | 221557 | 221847 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404937_bin.4_k141_4649 | ShaoY_2019_ERR3404937_bin.4_k141_4649_171 | 222273 | 223202 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4649 | ShaoY_2019_ERR3404937_bin.4_k141_4649_172 | 223115 | 224899 | - | 3.A.1.21.2 |
| CAZyme | ShaoY_2019_ERR3404937_bin.4_k141_4649 | ShaoY_2019_ERR3404937_bin.4_k141_4649_173 | 224944 | 225861 | - | CE4 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4649 | ShaoY_2019_ERR3404937_bin.4_k141_4649_174 | 225929 | 227152 | - | 2.A.1.3.37 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4649 | ShaoY_2019_ERR3404937_bin.4_k141_4649_175 | 227240 | 228346 | - | 9.B.149.1.1 |
| pfam | ShaoY_2019_ERR3404937_bin.4_k141_4649 | ShaoY_2019_ERR3404937_bin.4_k141_4649_176 | 228401 | 229345 | + | PDDEXK_1 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4649 | ShaoY_2019_ERR3404937_bin.4_k141_4649_177 | 229885 | 231018 | + | 9.B.102.1.12 |
| pfam | ShaoY_2019_ERR3404937_bin.4_k141_4649 | ShaoY_2019_ERR3404937_bin.4_k141_4649_178 | 231135 | 231356 | + | TusA |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4649 | ShaoY_2019_ERR3404937_bin.4_k141_4649_179 | 231520 | 232497 | + | 8.A.5.1.6 |
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4649_169
Type: TC
Location: 220015 - 221553 (-)
Type: TC
Location: 220015 - 221553 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4649_170
Type:
Location: 221557 - 221847 (-)
Type:
Location: 221557 - 221847 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4649_171
Type:
Location: 222273 - 223202 (+)
Type:
Location: 222273 - 223202 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4649_172
Type: TC
Location: 223115 - 224899 (-)
Type: TC
Location: 223115 - 224899 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4649_173
Type: CAZyme
Location: 224944 - 225861 (-)
Type: CAZyme
Location: 224944 - 225861 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4649_174
Type: TC
Location: 225929 - 227152 (-)
Type: TC
Location: 225929 - 227152 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4649_175
Type: TC
Location: 227240 - 228346 (-)
Type: TC
Location: 227240 - 228346 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4649_176
Type: pfam
Location: 228401 - 229345 (+)
Type: pfam
Location: 228401 - 229345 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4649_177
Type: TC
Location: 229885 - 231018 (+)
Type: TC
Location: 229885 - 231018 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4649_178
Type: pfam
Location: 231135 - 231356 (+)
Type: pfam
Location: 231135 - 231356 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4649_179
Type: TC
Location: 231520 - 232497 (+)
Type: TC
Location: 231520 - 232497 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Actinomyces
Species
Actinomyces haliotis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.