Cluster: ShaoY_2019_ERR3404937_bin.4_CGC23
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404937_bin.4
- CGC Family ID: CGCFAM_05346
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4559 | ShaoY_2019_ERR3404937_bin.4_k141_4559_17 | 23842 | 24771 | - | 9.B.158.1.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404937_bin.4_k141_4559 | ShaoY_2019_ERR3404937_bin.4_k141_4559_18 | 24938 | 25237 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4559 | ShaoY_2019_ERR3404937_bin.4_k141_4559_19 | 25390 | 27504 | + | 3.A.1.106.12 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4559 | ShaoY_2019_ERR3404937_bin.4_k141_4559_20 | 27501 | 29312 | + | 3.A.1.106.11 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4559 | ShaoY_2019_ERR3404937_bin.4_k141_4559_21 | 29405 | 30322 | - | 2.A.4.7.7 |
| pfam | ShaoY_2019_ERR3404937_bin.4_k141_4559 | ShaoY_2019_ERR3404937_bin.4_k141_4559_22 | 30474 | 31304 | + | Gly_transporter | Gly_transporter |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404937_bin.4_k141_4559 | ShaoY_2019_ERR3404937_bin.4_k141_4559_23 | 31470 | 31811 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4559 | ShaoY_2019_ERR3404937_bin.4_k141_4559_24 | 32058 | 32978 | + | 2.A.89.3.2 |
| pfam | ShaoY_2019_ERR3404937_bin.4_k141_4559 | ShaoY_2019_ERR3404937_bin.4_k141_4559_25 | 33095 | 34249 | - | APP1_cat |
| CAZyme | ShaoY_2019_ERR3404937_bin.4_k141_4559 | ShaoY_2019_ERR3404937_bin.4_k141_4559_26 | 34299 | 35603 | - | GT87 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_4559 | ShaoY_2019_ERR3404937_bin.4_k141_4559_27 | 35652 | 36935 | - | 2.A.1.67.1 |
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4559_17
Type: TC
Location: 23842 - 24771 (-)
Type: TC
Location: 23842 - 24771 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4559_18
Type:
Location: 24938 - 25237 (-)
Type:
Location: 24938 - 25237 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4559_19
Type: TC
Location: 25390 - 27504 (+)
Type: TC
Location: 25390 - 27504 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4559_20
Type: TC
Location: 27501 - 29312 (+)
Type: TC
Location: 27501 - 29312 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4559_21
Type: TC
Location: 29405 - 30322 (-)
Type: TC
Location: 29405 - 30322 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4559_22
Type: pfam
Location: 30474 - 31304 (+)
Type: pfam
Location: 30474 - 31304 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4559_23
Type:
Location: 31470 - 31811 (-)
Type:
Location: 31470 - 31811 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4559_24
Type: TC
Location: 32058 - 32978 (+)
Type: TC
Location: 32058 - 32978 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4559_25
Type: pfam
Location: 33095 - 34249 (-)
Type: pfam
Location: 33095 - 34249 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4559_26
Type: CAZyme
Location: 34299 - 35603 (-)
Type: CAZyme
Location: 34299 - 35603 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4559_27
Type: TC
Location: 35652 - 36935 (-)
Type: TC
Location: 35652 - 36935 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Actinomyces
Species
Actinomyces haliotis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.