dbCAN Logo

Cluster: ShaoY_2019_ERR3404937_bin.4_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404937_bin.4_k141_4062 ShaoY_2019_ERR3404937_bin.4_k141_4062_5 2300 3937 - 3.A.16.1.3
STP ShaoY_2019_ERR3404937_bin.4_k141_4062 ShaoY_2019_ERR3404937_bin.4_k141_4062_6 4203 5021 - PfkB
pfam ShaoY_2019_ERR3404937_bin.4_k141_4062 ShaoY_2019_ERR3404937_bin.4_k141_4062_7 5203 5799 - Epimerase | F420_oxidored | NmrA | NAD_binding_10
CAZyme ShaoY_2019_ERR3404937_bin.4_k141_4062 ShaoY_2019_ERR3404937_bin.4_k141_4062_8 6089 8173 + GH13_4
pfam ShaoY_2019_ERR3404937_bin.4_k141_4062 ShaoY_2019_ERR3404937_bin.4_k141_4062_9 8360 10060 + SDH_alpha | SDH_beta
CAZyme ShaoY_2019_ERR3404937_bin.4_k141_4062 ShaoY_2019_ERR3404937_bin.4_k141_4062_10 10219 12126 + GH13_30
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4062_5
Type: TC
Location: 2300 - 3937 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4062_6
Type: STP
Location: 4203 - 5021 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4062_7
Type: pfam
Location: 5203 - 5799 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4062_8
Type: CAZyme
Location: 6089 - 8173 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4062_9
Type: pfam
Location: 8360 - 10060 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_4062_10
Type: CAZyme
Location: 10219 - 12126 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List