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Cluster: ShaoY_2019_ERR3404937_bin.4_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_52 62877 64364 - 1.I.1.1.3
TF ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_53 64615 65328 - GntR
STP ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_54 65472 66005 + SKI
TC ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_55 66035 67432 + 2.A.8.1.4
TC ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_56 67520 68386 - 2.A.7.3.6
TC ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_57 68448 69554 - 2.A.69.3.1
pfam ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_58 69588 70598 - Exo_endo_phos
pfam ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_59 70600 71058 - SelR
TC ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_60 71121 72986 - 1.A.23.7.1
NULL(UNKNOWN) ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_61 73195 73488 - NULL(UNKNOWN)
[View Structural Homologs]
pfam ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_62 74299 74688 + Zincin_1
CAZyme ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_63 74796 76055 + GH3
NULL(UNKNOWN) ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_64 76246 77925 - NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_65 78098 80149 + 3.A.1.119.1
TC ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_66 80149 81885 + 3.A.1.119.1
pfam ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_67 82052 82804 - AbiEi_1
pfam ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_68 83210 86128 - Exo_endo_phos
TC ShaoY_2019_ERR3404937_bin.4_k141_716 ShaoY_2019_ERR3404937_bin.4_k141_716_69 86524 87057 + 1.E.34.1.4
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_52
Type: TC
Location: 62877 - 64364 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_53
Type: TF
Location: 64615 - 65328 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_54
Type: STP
Location: 65472 - 66005 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_55
Type: TC
Location: 66035 - 67432 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_56
Type: TC
Location: 67520 - 68386 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_57
Type: TC
Location: 68448 - 69554 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_58
Type: pfam
Location: 69588 - 70598 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_59
Type: pfam
Location: 70600 - 71058 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_60
Type: TC
Location: 71121 - 72986 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_61
Type:
Location: 73195 - 73488 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_62
Type: pfam
Location: 74299 - 74688 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_63
Type: CAZyme
Location: 74796 - 76055 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_64
Type:
Location: 76246 - 77925 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_65
Type: TC
Location: 78098 - 80149 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_66
Type: TC
Location: 80149 - 81885 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_67
Type: pfam
Location: 82052 - 82804 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_68
Type: pfam
Location: 83210 - 86128 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_716_69
Type: TC
Location: 86524 - 87057 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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