Cluster: ShaoY_2019_ERR3404937_bin.4_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404937_bin.4
- CGC Family ID: CGCFAM_00687
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404937_bin.4_k141_3671 | ShaoY_2019_ERR3404937_bin.4_k141_3671_23 | 27269 | 27499 | + | 4.A.1.1.5 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_3671 | ShaoY_2019_ERR3404937_bin.4_k141_3671_24 | 27496 | 27951 | + | 4.A.1.1.6 |
| CAZyme | ShaoY_2019_ERR3404937_bin.4_k141_3671 | ShaoY_2019_ERR3404937_bin.4_k141_3671_25 | 28066 | 30234 | - | GH77 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_3671 | ShaoY_2019_ERR3404937_bin.4_k141_3671_26 | 30588 | 30818 | - | 4.A.1.1.5 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_3671 | ShaoY_2019_ERR3404937_bin.4_k141_3671_27 | 31186 | 32883 | + | 8.A.7.1.2 |
| pfam | ShaoY_2019_ERR3404937_bin.4_k141_3671 | ShaoY_2019_ERR3404937_bin.4_k141_3671_28 | 32880 | 33866 | + | Acyl_CoA_thio | 4HBT_3 | 4HBT_3C |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_3671 | ShaoY_2019_ERR3404937_bin.4_k141_3671_29 | 34023 | 35705 | + | 3.A.1.120.6 |
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3671_23
Type: TC
Location: 27269 - 27499 (+)
Type: TC
Location: 27269 - 27499 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3671_24
Type: TC
Location: 27496 - 27951 (+)
Type: TC
Location: 27496 - 27951 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3671_25
Type: CAZyme
Location: 28066 - 30234 (-)
Type: CAZyme
Location: 28066 - 30234 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3671_26
Type: TC
Location: 30588 - 30818 (-)
Type: TC
Location: 30588 - 30818 (-)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3671_27
Type: TC
Location: 31186 - 32883 (+)
Type: TC
Location: 31186 - 32883 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3671_28
Type: pfam
Location: 32880 - 33866 (+)
Type: pfam
Location: 32880 - 33866 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3671_29
Type: TC
Location: 34023 - 35705 (+)
Type: TC
Location: 34023 - 35705 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Actinomyces
Species
Actinomyces haliotis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.