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Cluster: ShaoY_2019_ERR3404937_bin.4_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404937_bin.4_k141_3414 ShaoY_2019_ERR3404937_bin.4_k141_3414_77 88928 89719 + 3.A.1.3.9
TC ShaoY_2019_ERR3404937_bin.4_k141_3414 ShaoY_2019_ERR3404937_bin.4_k141_3414_78 89731 90621 + 3.A.1.3.9
TC ShaoY_2019_ERR3404937_bin.4_k141_3414 ShaoY_2019_ERR3404937_bin.4_k141_3414_79 90656 91336 + 3.A.1.3.9
TC ShaoY_2019_ERR3404937_bin.4_k141_3414 ShaoY_2019_ERR3404937_bin.4_k141_3414_80 91333 92283 + 3.A.1.3.9
pfam ShaoY_2019_ERR3404937_bin.4_k141_3414 ShaoY_2019_ERR3404937_bin.4_k141_3414_81 92366 93295 + Aminotran_4
CAZyme ShaoY_2019_ERR3404937_bin.4_k141_3414 ShaoY_2019_ERR3404937_bin.4_k141_3414_82 93424 95622 + GH36
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3414_77
Type: TC
Location: 88928 - 89719 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3414_78
Type: TC
Location: 89731 - 90621 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3414_79
Type: TC
Location: 90656 - 91336 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3414_80
Type: TC
Location: 91333 - 92283 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3414_81
Type: pfam
Location: 92366 - 93295 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_3414_82
Type: CAZyme
Location: 93424 - 95622 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3404937_bin.4_k141_3414_77 omnivore > vegan 1.02077 0.00220

🧭 Explore Read Mapping of CGC

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