Cluster: ShaoY_2019_ERR3404937_bin.4_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404937_bin.4
- CGC Family ID: CGCFAM_08132
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404937_bin.4_k141_1931 | ShaoY_2019_ERR3404937_bin.4_k141_1931_16 | 16352 | 19426 | + | GH2 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_1931 | ShaoY_2019_ERR3404937_bin.4_k141_1931_17 | 19496 | 20890 | + | 2.A.2.3.5 |
| CAZyme | ShaoY_2019_ERR3404937_bin.4_k141_1931 | ShaoY_2019_ERR3404937_bin.4_k141_1931_18 | 21281 | 21781 | + | GH29 |
| pfam | ShaoY_2019_ERR3404937_bin.4_k141_1931 | ShaoY_2019_ERR3404937_bin.4_k141_1931_19 | 21765 | 22097 | + | Alpha_L_fucos |
| pfam | ShaoY_2019_ERR3404937_bin.4_k141_1931 | ShaoY_2019_ERR3404937_bin.4_k141_1931_20 | 22412 | 22969 | + | LigT_PEase | 2_5_RNA_ligase2 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_1931 | ShaoY_2019_ERR3404937_bin.4_k141_1931_21 | 23011 | 24402 | + | 9.B.126.1.3 |
| pfam | ShaoY_2019_ERR3404937_bin.4_k141_1931 | ShaoY_2019_ERR3404937_bin.4_k141_1931_22 | 24474 | 25652 | + | NTP_transferase | NTP_transf_3 | ManC_GMP_beta-helix |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_1931 | ShaoY_2019_ERR3404937_bin.4_k141_1931_23 | 25891 | 26988 | + | 3.A.1.2.17 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_1931 | ShaoY_2019_ERR3404937_bin.4_k141_1931_24 | 27199 | 28953 | + | 3.A.1.2.12 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_1931 | ShaoY_2019_ERR3404937_bin.4_k141_1931_25 | 28950 | 30230 | + | 3.A.1.2.12 |
| TC | ShaoY_2019_ERR3404937_bin.4_k141_1931 | ShaoY_2019_ERR3404937_bin.4_k141_1931_26 | 30234 | 31517 | + | 3.A.1.2.18 |
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1931_16
Type: CAZyme
Location: 16352 - 19426 (+)
Type: CAZyme
Location: 16352 - 19426 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1931_17
Type: TC
Location: 19496 - 20890 (+)
Type: TC
Location: 19496 - 20890 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1931_18
Type: CAZyme
Location: 21281 - 21781 (+)
Type: CAZyme
Location: 21281 - 21781 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1931_19
Type: pfam
Location: 21765 - 22097 (+)
Type: pfam
Location: 21765 - 22097 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1931_20
Type: pfam
Location: 22412 - 22969 (+)
Type: pfam
Location: 22412 - 22969 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1931_21
Type: TC
Location: 23011 - 24402 (+)
Type: TC
Location: 23011 - 24402 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1931_22
Type: pfam
Location: 24474 - 25652 (+)
Type: pfam
Location: 24474 - 25652 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1931_23
Type: TC
Location: 25891 - 26988 (+)
Type: TC
Location: 25891 - 26988 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1931_24
Type: TC
Location: 27199 - 28953 (+)
Type: TC
Location: 27199 - 28953 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1931_25
Type: TC
Location: 28950 - 30230 (+)
Type: TC
Location: 28950 - 30230 (+)
Gene ID: ShaoY_2019_ERR3404937_bin.4_k141_1931_26
Type: TC
Location: 30234 - 31517 (+)
Type: TC
Location: 30234 - 31517 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Actinomyces
Species
Actinomyces haliotis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.