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Cluster: ShaoY_2019_ERR3404908_bin.6_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_12 10445 11152 + 1.C.82.1.1
pfam ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_13 11440 12150 - Metallophos | Metallophos_2
pfam ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_14 12147 14063 - Bmp
TC ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_15 14158 14925 - 1.A.23.4.2
TC ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_16 15261 16055 - 3.A.1.34.1
TC ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_17 16048 16971 - 3.A.1.34.1
TC ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_18 17176 18156 - 3.A.1.34.1
NULL(UNKNOWN) ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_19 18316 19104 - NULL(UNKNOWN)
[View Structural Homologs]
pfam ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_20 19363 20766 - tRNA-synt_2 | tRNA_anti-codon
TC ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_21 20903 22837 - 9.B.97.5.1
TC ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_22 23073 23636 - 4.A.1.2.6
peptidase ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_23 23883 24782 + S09.UPW
TC ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_24 25250 27610 + 9.A.8.1.6
TC ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_25 27732 28928 + 2.A.1.2.18
CAZyme ShaoY_2019_ERR3404908_bin.6_k141_4853 ShaoY_2019_ERR3404908_bin.6_k141_4853_26 29098 30474 + GH13_20
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_12
Type: TC
Location: 10445 - 11152 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_13
Type: pfam
Location: 11440 - 12150 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_14
Type: pfam
Location: 12147 - 14063 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_15
Type: TC
Location: 14158 - 14925 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_16
Type: TC
Location: 15261 - 16055 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_17
Type: TC
Location: 16048 - 16971 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_18
Type: TC
Location: 17176 - 18156 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_19
Type:
Location: 18316 - 19104 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_20
Type: pfam
Location: 19363 - 20766 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_21
Type: TC
Location: 20903 - 22837 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_22
Type: TC
Location: 23073 - 23636 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_23
Type: peptidase
Location: 23883 - 24782 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_24
Type: TC
Location: 25250 - 27610 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_25
Type: TC
Location: 27732 - 28928 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_4853_26
Type: CAZyme
Location: 29098 - 30474 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3404908_bin.6_k141_4853_21 vegan > omnivore 1.14665 0.01057

🧭 Explore Read Mapping of CGC

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