Cluster: ShaoY_2019_ERR3404908_bin.6_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: ShaoY_2019_ERR3404908_bin.6
- CGC Family ID: CGCFAM_00014
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404908_bin.6_k141_2976 | ShaoY_2019_ERR3404908_bin.6_k141_2976_4 | 3543 | 5237 | + | 4.A.3.1.1 |
| pfam | ShaoY_2019_ERR3404908_bin.6_k141_2976 | ShaoY_2019_ERR3404908_bin.6_k141_2976_5 | 5595 | 5900 | - | ParE_toxin |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404908_bin.6_k141_2976 | ShaoY_2019_ERR3404908_bin.6_k141_2976_6 | 5890 | 6156 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3404908_bin.6_k141_2976 | ShaoY_2019_ERR3404908_bin.6_k141_2976_7 | 6453 | 7874 | - | GH1 |
| TC | ShaoY_2019_ERR3404908_bin.6_k141_2976 | ShaoY_2019_ERR3404908_bin.6_k141_2976_8 | 7950 | 8870 | - | 4.A.3.1.1 |
| TC | ShaoY_2019_ERR3404908_bin.6_k141_2976 | ShaoY_2019_ERR3404908_bin.6_k141_2976_9 | 8810 | 9718 | - | 4.A.3.1.1 |
| TF | ShaoY_2019_ERR3404908_bin.6_k141_2976 | ShaoY_2019_ERR3404908_bin.6_k141_2976_10 | 9994 | 11004 | + | LacI |
| CAZyme | ShaoY_2019_ERR3404908_bin.6_k141_2976 | ShaoY_2019_ERR3404908_bin.6_k141_2976_11 | 11191 | 12630 | - | GH1 |
| TC | ShaoY_2019_ERR3404908_bin.6_k141_2976 | ShaoY_2019_ERR3404908_bin.6_k141_2976_12 | 12697 | 14274 | - | 4.A.3.1.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404908_bin.6_k141_2976 | ShaoY_2019_ERR3404908_bin.6_k141_2976_13 | 14290 | 14814 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | ShaoY_2019_ERR3404908_bin.6_k141_2976 | ShaoY_2019_ERR3404908_bin.6_k141_2976_14 | 14829 | 15833 | + | LacI |
| TC | ShaoY_2019_ERR3404908_bin.6_k141_2976 | ShaoY_2019_ERR3404908_bin.6_k141_2976_15 | 16048 | 16386 | + | 4.A.3.1.2 |
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_2976_4
Type: TC
Location: 3543 - 5237 (+)
Type: TC
Location: 3543 - 5237 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_2976_5
Type: pfam
Location: 5595 - 5900 (-)
Type: pfam
Location: 5595 - 5900 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_2976_6
Type:
Location: 5890 - 6156 (-)
Type:
Location: 5890 - 6156 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_2976_7
Type: CAZyme
Location: 6453 - 7874 (-)
Type: CAZyme
Location: 6453 - 7874 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_2976_8
Type: TC
Location: 7950 - 8870 (-)
Type: TC
Location: 7950 - 8870 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_2976_9
Type: TC
Location: 8810 - 9718 (-)
Type: TC
Location: 8810 - 9718 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_2976_10
Type: TF
Location: 9994 - 11004 (+)
Type: TF
Location: 9994 - 11004 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_2976_11
Type: CAZyme
Location: 11191 - 12630 (-)
Type: CAZyme
Location: 11191 - 12630 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_2976_12
Type: TC
Location: 12697 - 14274 (-)
Type: TC
Location: 12697 - 14274 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_2976_13
Type:
Location: 14290 - 14814 (-)
Type:
Location: 14290 - 14814 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_2976_14
Type: TF
Location: 14829 - 15833 (+)
Type: TF
Location: 14829 - 15833 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_2976_15
Type: TC
Location: 16048 - 16386 (+)
Type: TC
Location: 16048 - 16386 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.