dbCAN Logo

Cluster: ShaoY_2019_ERR3404908_bin.6_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404908_bin.6_k141_12304 ShaoY_2019_ERR3404908_bin.6_k141_12304_6 6831 7661 - 3.A.1.132.3
pfam ShaoY_2019_ERR3404908_bin.6_k141_12304 ShaoY_2019_ERR3404908_bin.6_k141_12304_7 7921 10800 + UvrA_DNA-bind | UvrA_inter
pfam ShaoY_2019_ERR3404908_bin.6_k141_12304 ShaoY_2019_ERR3404908_bin.6_k141_12304_8 10934 11434 + tRNA_edit
TC ShaoY_2019_ERR3404908_bin.6_k141_12304 ShaoY_2019_ERR3404908_bin.6_k141_12304_9 11438 13741 + 2.A.66.4.4
pfam ShaoY_2019_ERR3404908_bin.6_k141_12304 ShaoY_2019_ERR3404908_bin.6_k141_12304_10 13748 15688 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC ShaoY_2019_ERR3404908_bin.6_k141_12304 ShaoY_2019_ERR3404908_bin.6_k141_12304_11 16054 17667 + 3.A.1.5.27
TC ShaoY_2019_ERR3404908_bin.6_k141_12304 ShaoY_2019_ERR3404908_bin.6_k141_12304_12 17823 18779 + 3.A.1.5.38
TC ShaoY_2019_ERR3404908_bin.6_k141_12304 ShaoY_2019_ERR3404908_bin.6_k141_12304_13 18783 20798 + 3.A.1.5.25
TC ShaoY_2019_ERR3404908_bin.6_k141_12304 ShaoY_2019_ERR3404908_bin.6_k141_12304_14 20799 21626 + 3.A.1.5.27
CAZyme ShaoY_2019_ERR3404908_bin.6_k141_12304 ShaoY_2019_ERR3404908_bin.6_k141_12304_15 21758 22684 + CE7
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_12304_6
Type: TC
Location: 6831 - 7661 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_12304_7
Type: pfam
Location: 7921 - 10800 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_12304_8
Type: pfam
Location: 10934 - 11434 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_12304_9
Type: TC
Location: 11438 - 13741 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_12304_10
Type: pfam
Location: 13748 - 15688 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_12304_11
Type: TC
Location: 16054 - 17667 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_12304_12
Type: TC
Location: 17823 - 18779 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_12304_13
Type: TC
Location: 18783 - 20798 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_12304_14
Type: TC
Location: 20799 - 21626 (+)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_12304_15
Type: CAZyme
Location: 21758 - 22684 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List