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Cluster: ShaoY_2019_ERR3404908_bin.6_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404908_bin.6_k141_8458 ShaoY_2019_ERR3404908_bin.6_k141_8458_7 5908 7077 - CE9
STP ShaoY_2019_ERR3404908_bin.6_k141_8458 ShaoY_2019_ERR3404908_bin.6_k141_8458_8 7195 8361 - SIS | SIS
TF ShaoY_2019_ERR3404908_bin.6_k141_8458 ShaoY_2019_ERR3404908_bin.6_k141_8458_9 8476 9207 - GntR
TC ShaoY_2019_ERR3404908_bin.6_k141_8458 ShaoY_2019_ERR3404908_bin.6_k141_8458_10 9393 10475 - 4.A.6.1.4
TC ShaoY_2019_ERR3404908_bin.6_k141_8458 ShaoY_2019_ERR3404908_bin.6_k141_8458_11 10465 11265 - 4.A.6.1.4
TC ShaoY_2019_ERR3404908_bin.6_k141_8458 ShaoY_2019_ERR3404908_bin.6_k141_8458_12 11356 11838 - 4.A.6.1.4
pfam ShaoY_2019_ERR3404908_bin.6_k141_8458 ShaoY_2019_ERR3404908_bin.6_k141_8458_13 11875 12156 - YajC
TC ShaoY_2019_ERR3404908_bin.6_k141_8458 ShaoY_2019_ERR3404908_bin.6_k141_8458_14 12156 12599 - 4.A.6.1.16
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_8458_7
Type: CAZyme
Location: 5908 - 7077 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_8458_8
Type: STP
Location: 7195 - 8361 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_8458_9
Type: TF
Location: 8476 - 9207 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_8458_10
Type: TC
Location: 9393 - 10475 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_8458_11
Type: TC
Location: 10465 - 11265 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_8458_12
Type: TC
Location: 11356 - 11838 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_8458_13
Type: pfam
Location: 11875 - 12156 (-)
Gene ID: ShaoY_2019_ERR3404908_bin.6_k141_8458_14
Type: TC
Location: 12156 - 12599 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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