Cluster: ShaoY_2019_ERR3404906_bin.10_CGC9
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_15 | 16335 | 17429 | + | 3.A.1.1.16 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_16 | 17419 | 19152 | + | 3.A.1.20.4 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_17 | 19157 | 20224 | + | 3.A.1.20.4 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_18 | 20294 | 20725 | + | PrcB_C |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_19 | 20855 | 21499 | + | Hexapep | SATase_N |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_20 | 21562 | 23145 | + | CBM50 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_21 | 23479 | 23739 | + | GIY-YIG |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_22 | 23716 | 24363 | - | 1.C.113.1.3 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_15
Type: TC
Location: 16335 - 17429 (+)
Type: TC
Location: 16335 - 17429 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_16
Type: TC
Location: 17419 - 19152 (+)
Type: TC
Location: 17419 - 19152 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_17
Type: TC
Location: 19157 - 20224 (+)
Type: TC
Location: 19157 - 20224 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_18
Type: pfam
Location: 20294 - 20725 (+)
Type: pfam
Location: 20294 - 20725 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_19
Type: pfam
Location: 20855 - 21499 (+)
Type: pfam
Location: 20855 - 21499 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_20
Type: CAZyme
Location: 21562 - 23145 (+)
Type: CAZyme
Location: 21562 - 23145 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_21
Type: pfam
Location: 23479 - 23739 (+)
Type: pfam
Location: 23479 - 23739 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_22
Type: TC
Location: 23716 - 24363 (-)
Type: TC
Location: 23716 - 24363 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.