Cluster: ShaoY_2019_ERR3404906_bin.10_CGC6
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_909 | ShaoY_2019_ERR3404906_bin.10_k141_909_18 | 19450 | 21459 | - | PL17_1 |
| STP | ShaoY_2019_ERR3404906_bin.10_k141_909 | ShaoY_2019_ERR3404906_bin.10_k141_909_19 | 21622 | 23076 | - | Response_reg |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_909 | ShaoY_2019_ERR3404906_bin.10_k141_909_20 | 23076 | 24902 | - | 8.A.59.2.1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_909 | ShaoY_2019_ERR3404906_bin.10_k141_909_21 | 24967 | 25809 | - | 3.A.1.1.24 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_909 | ShaoY_2019_ERR3404906_bin.10_k141_909_22 | 25821 | 26741 | - | 3.A.1.1.20 |
| STP | ShaoY_2019_ERR3404906_bin.10_k141_909 | ShaoY_2019_ERR3404906_bin.10_k141_909_23 | 26815 | 28251 | - | SBP_bac_1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_909 | ShaoY_2019_ERR3404906_bin.10_k141_909_24 | 28577 | 31198 | - | 4.A.2.1.17 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_909 | ShaoY_2019_ERR3404906_bin.10_k141_909_25 | 31542 | 32708 | + | 3.A.1.2.12 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_909 | ShaoY_2019_ERR3404906_bin.10_k141_909_26 | 32816 | 34351 | + | 3.A.1.2.17 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_909 | ShaoY_2019_ERR3404906_bin.10_k141_909_27 | 34348 | 35433 | + | 3.A.1.2.17 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_909 | ShaoY_2019_ERR3404906_bin.10_k141_909_28 | 35430 | 36383 | + | 3.A.1.2.12 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_909_18
Type: CAZyme
Location: 19450 - 21459 (-)
Type: CAZyme
Location: 19450 - 21459 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_909_19
Type: STP
Location: 21622 - 23076 (-)
Type: STP
Location: 21622 - 23076 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_909_20
Type: TC
Location: 23076 - 24902 (-)
Type: TC
Location: 23076 - 24902 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_909_21
Type: TC
Location: 24967 - 25809 (-)
Type: TC
Location: 24967 - 25809 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_909_22
Type: TC
Location: 25821 - 26741 (-)
Type: TC
Location: 25821 - 26741 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_909_23
Type: STP
Location: 26815 - 28251 (-)
Type: STP
Location: 26815 - 28251 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_909_24
Type: TC
Location: 28577 - 31198 (-)
Type: TC
Location: 28577 - 31198 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_909_25
Type: TC
Location: 31542 - 32708 (+)
Type: TC
Location: 31542 - 32708 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_909_26
Type: TC
Location: 32816 - 34351 (+)
Type: TC
Location: 32816 - 34351 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_909_27
Type: TC
Location: 34348 - 35433 (+)
Type: TC
Location: 34348 - 35433 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_909_28
Type: TC
Location: 35430 - 36383 (+)
Type: TC
Location: 35430 - 36383 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.