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Cluster: ShaoY_2019_ERR3404906_bin.10_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_28 23932 25515 + 2.A.49.5.5
pfam ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_29 25525 26286 - TMEM164
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_30 26641 27423 + 3.A.1.3.27
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_31 27459 28151 + 3.A.1.3.15
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_32 28141 28890 + 3.A.1.3.25
pfam ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_33 29091 29603 + Flavodoxin_3
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_34 29616 31559 + 3.A.16.1.2
pfam ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_35 31459 32478 - Acyl_transf_3
TF ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_36 32504 33451 - HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_37 33719 34516 + 3.A.1.1.10
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_38 34690 35595 + 3.A.1.1.29
pfam ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_39 35618 37282 + SBP_bac_8
CAZyme ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_40 37394 39049 + CE12
CAZyme ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_41 39080 41239 + GH112
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_42 41335 43497 + 1.B.52.2.2
pfam ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_43 44235 45140 - Radical_SAM
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_44 45266 45973 + 2.A.78.1.1
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_45 45970 46308 + 2.A.78.1.1
TF ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_46 46319 47248 + HTH_1
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_47 47506 48876 + 2.A.40.2.1
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_48 49047 51191 + 1.B.52.2.2
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_49 51433 52554 + 3.A.1.20.1
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_50 52636 53715 + 3.A.1.20.1
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_51 53709 55361 + 3.A.1.20.1
pfam ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_52 55376 56824 + PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
STP ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_53 56859 57995 + SBP_bac_1
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_54 57992 59692 + 8.A.59.2.1
TF ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_55 59685 60428 + HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_56 60543 61145 + 3.A.1.28.1
pfam ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_57 61171 61944 + CbiQ
TC ShaoY_2019_ERR3404906_bin.10_k141_9776 ShaoY_2019_ERR3404906_bin.10_k141_9776_58 61935 63623 + 3.A.1.33.1
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_28
Type: TC
Location: 23932 - 25515 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_29
Type: pfam
Location: 25525 - 26286 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_30
Type: TC
Location: 26641 - 27423 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_31
Type: TC
Location: 27459 - 28151 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_32
Type: TC
Location: 28141 - 28890 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_33
Type: pfam
Location: 29091 - 29603 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_34
Type: TC
Location: 29616 - 31559 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_35
Type: pfam
Location: 31459 - 32478 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_36
Type: TF
Location: 32504 - 33451 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_37
Type: TC
Location: 33719 - 34516 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_38
Type: TC
Location: 34690 - 35595 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_39
Type: pfam
Location: 35618 - 37282 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_40
Type: CAZyme
Location: 37394 - 39049 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_41
Type: CAZyme
Location: 39080 - 41239 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_42
Type: TC
Location: 41335 - 43497 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_43
Type: pfam
Location: 44235 - 45140 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_44
Type: TC
Location: 45266 - 45973 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_45
Type: TC
Location: 45970 - 46308 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_46
Type: TF
Location: 46319 - 47248 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_47
Type: TC
Location: 47506 - 48876 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_48
Type: TC
Location: 49047 - 51191 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_49
Type: TC
Location: 51433 - 52554 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_50
Type: TC
Location: 52636 - 53715 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_51
Type: TC
Location: 53709 - 55361 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_52
Type: pfam
Location: 55376 - 56824 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_53
Type: STP
Location: 56859 - 57995 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_54
Type: TC
Location: 57992 - 59692 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_55
Type: TF
Location: 59685 - 60428 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_56
Type: TC
Location: 60543 - 61145 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_57
Type: pfam
Location: 61171 - 61944 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9776_58
Type: TC
Location: 61935 - 63623 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Lacrimispora
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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