Cluster: ShaoY_2019_ERR3404906_bin.10_CGC53
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- CGC Family ID: CGCFAM_03834
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_9706 | ShaoY_2019_ERR3404906_bin.10_k141_9706_27 | 27505 | 28743 | - | GH3 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.10_k141_9706 | ShaoY_2019_ERR3404906_bin.10_k141_9706_28 | 28936 | 29172 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_9706 | ShaoY_2019_ERR3404906_bin.10_k141_9706_29 | 29361 | 31949 | - | 3.A.9.1.2 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_9706 | ShaoY_2019_ERR3404906_bin.10_k141_9706_30 | 32360 | 32905 | + | Choline_bind_1 | Choline_bind_1 | Choline_bind_3 | Choline_bind_3 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_9706 | ShaoY_2019_ERR3404906_bin.10_k141_9706_31 | 32926 | 34248 | - | 2.A.66.1.28 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_9706 | ShaoY_2019_ERR3404906_bin.10_k141_9706_32 | 34257 | 35237 | - | GH109 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9706_27
Type: CAZyme
Location: 27505 - 28743 (-)
Type: CAZyme
Location: 27505 - 28743 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9706_28
Type:
Location: 28936 - 29172 (-)
Type:
Location: 28936 - 29172 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9706_29
Type: TC
Location: 29361 - 31949 (-)
Type: TC
Location: 29361 - 31949 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9706_30
Type: pfam
Location: 32360 - 32905 (+)
Type: pfam
Location: 32360 - 32905 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9706_31
Type: TC
Location: 32926 - 34248 (-)
Type: TC
Location: 32926 - 34248 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_9706_32
Type: CAZyme
Location: 34257 - 35237 (-)
Type: CAZyme
Location: 34257 - 35237 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.