Cluster: ShaoY_2019_ERR3404906_bin.10_CGC50
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- CGC Family ID: CGCFAM_01684
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.10_k141_8258 | ShaoY_2019_ERR3404906_bin.10_k141_8258_54 | 53281 | 55887 | - | 3.A.3.2.21 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_8258 | ShaoY_2019_ERR3404906_bin.10_k141_8258_55 | 56069 | 56551 | + | LuxS |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_8258 | ShaoY_2019_ERR3404906_bin.10_k141_8258_56 | 56630 | 57583 | + | 2-Hacid_dh | 2-Hacid_dh_C | NAD_binding_2 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_8258 | ShaoY_2019_ERR3404906_bin.10_k141_8258_57 | 57570 | 59414 | - | GH13_11 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_8258 | ShaoY_2019_ERR3404906_bin.10_k141_8258_58 | 59829 | 61691 | - | 3.A.1.120.6 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8258_54
Type: TC
Location: 53281 - 55887 (-)
Type: TC
Location: 53281 - 55887 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8258_55
Type: pfam
Location: 56069 - 56551 (+)
Type: pfam
Location: 56069 - 56551 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8258_56
Type: pfam
Location: 56630 - 57583 (+)
Type: pfam
Location: 56630 - 57583 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8258_57
Type: CAZyme
Location: 57570 - 59414 (-)
Type: CAZyme
Location: 57570 - 59414 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_8258_58
Type: TC
Location: 59829 - 61691 (-)
Type: TC
Location: 59829 - 61691 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.