Cluster: ShaoY_2019_ERR3404906_bin.10_CGC5
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_51 | 45067 | 46203 | - | 3.A.1.2.26 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_52 | 46205 | 47731 | - | 3.A.1.2.26 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_53 | 47795 | 48943 | - | 3.A.1.2.4 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_54 | 49032 | 49919 | - | HTH_6 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_55 | 50097 | 53138 | + | GH106 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_56 | 53146 | 54807 | + | FGGY_N | FGGY_C |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_57 | 54814 | 56223 | - | GntR |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_58 | 56347 | 57687 | + | 2.A.66.1.33 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_59 | 58130 | 58792 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_60 | 58789 | 59865 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_61 | 59852 | 60604 | - | 3.A.1.148.4 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_51
Type: TC
Location: 45067 - 46203 (-)
Type: TC
Location: 45067 - 46203 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_52
Type: TC
Location: 46205 - 47731 (-)
Type: TC
Location: 46205 - 47731 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_53
Type: TC
Location: 47795 - 48943 (-)
Type: TC
Location: 47795 - 48943 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_54
Type: TF
Location: 49032 - 49919 (-)
Type: TF
Location: 49032 - 49919 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_55
Type: CAZyme
Location: 50097 - 53138 (+)
Type: CAZyme
Location: 50097 - 53138 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_56
Type: pfam
Location: 53146 - 54807 (+)
Type: pfam
Location: 53146 - 54807 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_57
Type: TF
Location: 54814 - 56223 (-)
Type: TF
Location: 54814 - 56223 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_58
Type: TC
Location: 56347 - 57687 (+)
Type: TC
Location: 56347 - 57687 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_59
Type:
Location: 58130 - 58792 (-)
Type:
Location: 58130 - 58792 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_60
Type:
Location: 58789 - 59865 (-)
Type:
Location: 58789 - 59865 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_61
Type: TC
Location: 59852 - 60604 (-)
Type: TC
Location: 59852 - 60604 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.