Cluster: ShaoY_2019_ERR3404906_bin.10_CGC44
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- CGC Family ID: CGCFAM_00782
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_7433 | ShaoY_2019_ERR3404906_bin.10_k141_7433_29 | 26222 | 27271 | - | GH105 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_7433 | ShaoY_2019_ERR3404906_bin.10_k141_7433_30 | 27318 | 28037 | - | CE12 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_7433 | ShaoY_2019_ERR3404906_bin.10_k141_7433_31 | 28045 | 30780 | - | PL26 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.10_k141_7433 | ShaoY_2019_ERR3404906_bin.10_k141_7433_32 | 30784 | 32370 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_7433 | ShaoY_2019_ERR3404906_bin.10_k141_7433_33 | 32408 | 33316 | - | 3.A.1.1.29 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_7433 | ShaoY_2019_ERR3404906_bin.10_k141_7433_34 | 33333 | 34295 | - | 3.A.1.1.10 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_7433 | ShaoY_2019_ERR3404906_bin.10_k141_7433_35 | 34466 | 36604 | - | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_7433 | ShaoY_2019_ERR3404906_bin.10_k141_7433_36 | 36617 | 39658 | - | GH2 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_7433_29
Type: CAZyme
Location: 26222 - 27271 (-)
Type: CAZyme
Location: 26222 - 27271 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_7433_30
Type: CAZyme
Location: 27318 - 28037 (-)
Type: CAZyme
Location: 27318 - 28037 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_7433_31
Type: CAZyme
Location: 28045 - 30780 (-)
Type: CAZyme
Location: 28045 - 30780 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_7433_32
Type:
Location: 30784 - 32370 (-)
Type:
Location: 30784 - 32370 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_7433_33
Type: TC
Location: 32408 - 33316 (-)
Type: TC
Location: 32408 - 33316 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_7433_34
Type: TC
Location: 33333 - 34295 (-)
Type: TC
Location: 33333 - 34295 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_7433_35
Type: TF
Location: 34466 - 36604 (-)
Type: TF
Location: 34466 - 36604 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_7433_36
Type: CAZyme
Location: 36617 - 39658 (-)
Type: CAZyme
Location: 36617 - 39658 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.