Cluster: ShaoY_2019_ERR3404906_bin.10_CGC42
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.10_k141_6677 | ShaoY_2019_ERR3404906_bin.10_k141_6677_54 | 57747 | 59090 | - | 2.A.11.2.1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_6677 | ShaoY_2019_ERR3404906_bin.10_k141_6677_55 | 59597 | 60325 | - | 9.B.20.1.4 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_6677 | ShaoY_2019_ERR3404906_bin.10_k141_6677_56 | 60447 | 61361 | + | HTH_1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_6677 | ShaoY_2019_ERR3404906_bin.10_k141_6677_57 | 62187 | 64106 | - | 3.A.1.135.5 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_6677 | ShaoY_2019_ERR3404906_bin.10_k141_6677_58 | 64099 | 65850 | - | 3.A.1.135.5 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_6677 | ShaoY_2019_ERR3404906_bin.10_k141_6677_59 | 65871 | 66311 | - | MarR |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_6677 | ShaoY_2019_ERR3404906_bin.10_k141_6677_60 | 66844 | 68913 | - | GH13_39 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_6677 | ShaoY_2019_ERR3404906_bin.10_k141_6677_61 | 69239 | 71062 | - | 3.A.16.1.1 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6677_54
Type: TC
Location: 57747 - 59090 (-)
Type: TC
Location: 57747 - 59090 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6677_55
Type: TC
Location: 59597 - 60325 (-)
Type: TC
Location: 59597 - 60325 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6677_56
Type: TF
Location: 60447 - 61361 (+)
Type: TF
Location: 60447 - 61361 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6677_57
Type: TC
Location: 62187 - 64106 (-)
Type: TC
Location: 62187 - 64106 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6677_58
Type: TC
Location: 64099 - 65850 (-)
Type: TC
Location: 64099 - 65850 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6677_59
Type: TF
Location: 65871 - 66311 (-)
Type: TF
Location: 65871 - 66311 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6677_60
Type: CAZyme
Location: 66844 - 68913 (-)
Type: CAZyme
Location: 66844 - 68913 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6677_61
Type: TC
Location: 69239 - 71062 (-)
Type: TC
Location: 69239 - 71062 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.