Cluster: ShaoY_2019_ERR3404906_bin.10_CGC4
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_22 | 16947 | 19838 | + | GH3 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_23 | 19908 | 20510 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_24 | 20507 | 22996 | + | GH3 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_25 | 22965 | 24275 | - | HATPase_c_5 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_26 | 24272 | 24988 | - | LytTR |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_27 | 25207 | 26067 | + | 3.A.1.149.1 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_28 | 26064 | 26708 | + | ABC2_membrane_5 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_29 | 26711 | 27394 | - | 3.A.1.106.1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_884 | ShaoY_2019_ERR3404906_bin.10_k141_884_30 | 27463 | 28110 | - | 3.A.1.106.2 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_22
Type: CAZyme
Location: 16947 - 19838 (+)
Type: CAZyme
Location: 16947 - 19838 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_23
Type:
Location: 19908 - 20510 (+)
Type:
Location: 19908 - 20510 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_24
Type: CAZyme
Location: 20507 - 22996 (+)
Type: CAZyme
Location: 20507 - 22996 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_25
Type: pfam
Location: 22965 - 24275 (-)
Type: pfam
Location: 22965 - 24275 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_26
Type: TF
Location: 24272 - 24988 (-)
Type: TF
Location: 24272 - 24988 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_27
Type: TC
Location: 25207 - 26067 (+)
Type: TC
Location: 25207 - 26067 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_28
Type: pfam
Location: 26064 - 26708 (+)
Type: pfam
Location: 26064 - 26708 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_29
Type: TC
Location: 26711 - 27394 (-)
Type: TC
Location: 26711 - 27394 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_884_30
Type: TC
Location: 27463 - 28110 (-)
Type: TC
Location: 27463 - 28110 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.